Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1100X
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2 |Schizosacc...    25   5.4  
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    24   7.1  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    24   9.4  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    24   9.4  
SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase |Schizos...    24   9.4  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    24   9.4  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    24   9.4  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      24   9.4  

>SPBC1709.06 |dus2||tRNA dihydrouridine synthase Dus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
 Frame = -2

Query: 324 KVLLDVRPYITFMDTKFRKCISHSKNRPRLHIVRVRPTSYMDYKFYCGFFSAIIL*HYA- 148
           K LL   P    ++ +   CI   K      + RV P       F  G  S  +    A 
Sbjct: 43  KALLSGTPVERVVNDRIN-CIDFVKPPSNKVLFRVHPLEANRLIFQLGSASPELAVEAAK 101

Query: 147 -VLNTVAGKNRKCGCLYSFS 91
            V N VAG +  CGC   FS
Sbjct: 102 LVANDVAGIDLNCGCPKHFS 121


>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 26  FKA*AALRLNRSGLKPCEL 82
           ++A  +LRLN  G KPCEL
Sbjct: 78  YQALRSLRLNCLGDKPCEL 96


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 345 MSVASFIKVLLDVRPYITFMDTKFRKCISHSKNRPRLHIVRVRP 214
           +S ASF+ V     PY+    T   K ++ ++N    H +R  P
Sbjct: 146 ISSASFLSVPQSTPPYLVSQPTPLNKFLAGAENVDIPHSLRPVP 189


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 307 ASIHYLHGYKISQMYF 260
           A+  YLHGYK S ++F
Sbjct: 38  AATLYLHGYKHSSVFF 53


>SPBC1921.06c |pvg3|mug49|beta-1,3-galactosyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 225 RVRPTSYMDYKFYCGFF 175
           R  PT+  D+ + CGFF
Sbjct: 243 RELPTAVRDFPYMCGFF 259


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 288 MDTKFRKCISHSKNRPRLHIVRVRPTSYMDYKFYCGFF 175
           +DT+    +  S  +P L+ V+V P S    +F   FF
Sbjct: 376 LDTQLSHRLLPSLRKPLLNFVKVHPPSQKLLRFCRAFF 413


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +3

Query: 78  SL*NRKTNTSSRTCGSFPRL--YLKP 149
           SL  +  N+SS T G+FP+L  + KP
Sbjct: 19  SLHKKANNSSSSTTGAFPQLTSFTKP 44


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -2

Query: 156 HYAVLNTVAGKN--RKCGCLYSFSYFISSHGFKP 61
           H+ + +   GKN  +   C+++ SYF+S     P
Sbjct: 121 HFELTDIYEGKNLPKVIYCIHALSYFLSMQDLAP 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,515,442
Number of Sequences: 5004
Number of extensions: 29225
Number of successful extensions: 67
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)