Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1100X
         (385 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0917 + 24281029-24281137,24281998-24282095,24282196-242823...    27   6.7  
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789...    27   6.7  
01_01_0359 + 2829325-2832076,2832223-2832593,2833335-2833695,283...    26   8.9  

>12_02_0917 +
           24281029-24281137,24281998-24282095,24282196-24282372,
           24282490-24282590,24282684-24282759,24282843-24282902,
           24282999-24283195,24283296-24283392,24283478-24283564,
           24283925-24283983,24284535-24284626,24284706-24284783,
           24284891-24285051,24285303-24285530
          Length = 539

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 308 CVHTLPSWIQNFANVFLIQRTARGCT 231
           CVH+ PSW+Q  A  FL      G T
Sbjct: 29  CVHSNPSWVQVAALAFLHYLVMLGST 54


>01_07_0027 -
           40578075-40578437,40578647-40578767,40578852-40578952,
           40579176-40579451,40579485-40579805,40581609-40581623,
           40581969-40582295,40583287-40583538
          Length = 591

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = -1

Query: 199 LQILLRFFFRDNFVTLRGFKYSRGKEPQVRLLVFVFLFHKLTRL*AASV 53
           + +L R     N V LRG   SR        LVF ++ H LT L AA++
Sbjct: 135 IALLRRLGDHPNIVRLRGLVTSRLATAPSLYLVFDYMDHDLTGLAAAAL 183


>01_01_0359 +
           2829325-2832076,2832223-2832593,2833335-2833695,
           2833799-2833868,2834021-2834108,2834325-2834580,
           2834758-2834883,2835217-2835425
          Length = 1410

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 117 CGSFPRLYLKPRNVTKLSRKKNRN 188
           CG  P+L+L P  +  +S+ KN++
Sbjct: 645 CGGIPQLHLPPCPILDVSKNKNQH 668


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,621,453
Number of Sequences: 37544
Number of extensions: 180508
Number of successful extensions: 342
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)