Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1100X
         (385 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22247| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.56 
SB_12631| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.56 
SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.74 
SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)                29   1.3  
SB_1024| Best HMM Match : Ank (HMM E-Value=0)                          27   5.2  
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)                    26   9.2  

>SB_22247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 752

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 348 RMSVASFIKVLLDVRPYITFMDTKFRKCISHSK 250
           RM   SF  +L  + PYI   +T+FR CI   K
Sbjct: 88  RMKRVSFDLLLATITPYIRRQNTRFRNCIPPEK 120


>SB_12631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 30.3 bits (65), Expect = 0.56
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 348 RMSVASFIKVLLDVRPYITFMDTKFRKCISHSK 250
           RM   SF  +L  + PYI   +T+FR CI   K
Sbjct: 88  RMKRVSFDLLLATITPYIRRQNTRFRNCIPPEK 120


>SB_48146| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 810

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +3

Query: 87  NRKTNTSSRTCGSFPRLYLKPR-NVTKLSRKKNRNKIC-NPYN*LDVHALCAAAGGSLNE 260
           NRK +T+SR    FP+ Y +P  N+ KL     R  IC  PYN      L +    + N 
Sbjct: 543 NRKFDTNSRVLEGFPKTYREPSVNLRKLIEYFPR--ICIFPYNFTKSVKLYSLEILNWNY 600

Query: 261 KYICEI 278
           +Y C++
Sbjct: 601 EYFCQL 606


>SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)
          Length = 1060

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
 Frame = -2

Query: 327 IKVLLDVRPYITFMDTK-----FRKCISHSKNRPRLHIVRVRPTSYMDYKFYCGFFSAI 166
           + VL  VR Y+T  D K     F K I    ++   HI  V    Y+ YK+    F+ +
Sbjct: 508 LPVLETVRTYLTITDPKLTSRFFTKAIEKVNSKETSHIASVCSYRYLSYKYKYNTFTRV 566


>SB_1024| Best HMM Match : Ank (HMM E-Value=0)
          Length = 891

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -1

Query: 310 CASIHYLHGYKISQMYFSFKEPPAAAHSACTSN*LYGLQILLRFFFRDNFVTLRGFKY 137
           C S+   HG K++      K+  +A H +C+S  L  +++LLR     NF+ + G  Y
Sbjct: 371 CMSLLIEHGAKVNTCD---KDGISALHWSCSSGHLEAVKLLLRHGAFLNFMEVDGESY 425


>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 3369

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = +2

Query: 260 EIHLRNFVSMKVMYGRTSSRTLMKLATDIR 349
           E HL  F+++K  YG+ +   ++++ TD++
Sbjct: 292 EEHLEFFINLKGKYGQAAKDEVLQMITDLQ 321


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,116,278
Number of Sequences: 59808
Number of extensions: 211898
Number of successful extensions: 377
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)