BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1100X (385 letters) Database: fruitfly 53,049 sequences; 24,988,368 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AE014297-759|AAF54245.2| 389|Drosophila melanogaster CG17911-PA... 34 0.073 AE014297-758|AAF54244.2| 390|Drosophila melanogaster CG11735-PA... 29 1.6 AE013599-979|AAF58868.1| 350|Drosophila melanogaster CG12133-PA... 28 4.8 AY119115-1|AAM50975.1| 715|Drosophila melanogaster RE15579p pro... 27 6.3 AF212322-1|AAF24495.1| 601|Drosophila melanogaster SP71 protein. 27 6.3 AE014298-2|ABC67158.1| 715|Drosophila melanogaster CG17131-PB, ... 27 6.3 AE014298-1|AAZ52488.1| 715|Drosophila melanogaster CG17131-PA, ... 27 6.3 >AE014297-759|AAF54245.2| 389|Drosophila melanogaster CG17911-PA protein. Length = 389 Score = 33.9 bits (74), Expect = 0.073 Identities = 14/49 (28%), Positives = 28/49 (57%) Frame = -1 Query: 214 N*LYGLQILLRFFFRDNFVTLRGFKYSRGKEPQVRLLVFVFLFHKLTRL 68 N ++G+ +LL F + GF+ + G P + + +F+FLF L+++ Sbjct: 258 NDIFGIPLLLNFMVSTFVICFVGFQMTVGVPPDIMIKLFLFLFSSLSQV 306 >AE014297-758|AAF54244.2| 390|Drosophila melanogaster CG11735-PA protein. Length = 390 Score = 29.5 bits (63), Expect = 1.6 Identities = 12/49 (24%), Positives = 27/49 (55%) Frame = -1 Query: 214 N*LYGLQILLRFFFRDNFVTLRGFKYSRGKEPQVRLLVFVFLFHKLTRL 68 N ++G+ +LL F + GF+ + G P + + +F+FL ++++ Sbjct: 259 NDIFGIPLLLNFMVSSFVICFVGFQMTVGVPPDIVVKLFLFLVSSMSQV 307 >AE013599-979|AAF58868.1| 350|Drosophila melanogaster CG12133-PA protein. Length = 350 Score = 27.9 bits (59), Expect = 4.8 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%) Frame = +3 Query: 141 LKPRNVTKLSRKKNRNKIC--NPYN*LDVHAL--CA--AAGGSLNEKYIC 272 L PRN+T + + RNK+C NP+ VH + C AG L + +C Sbjct: 4 LHPRNMTNDQKSQYRNKLCNINPFAHELVHMVFTCCPMVAGDKLPDSRVC 53 >AY119115-1|AAM50975.1| 715|Drosophila melanogaster RE15579p protein. Length = 715 Score = 27.5 bits (58), Expect = 6.3 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -2 Query: 180 FFSAIIL*HYAVLNTVAGKNRKCGCLYSFSYFISSHGFKPLR 55 + + ++L H++V+ T A K K C Y S + G P+R Sbjct: 441 YSNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIR 482 >AF212322-1|AAF24495.1| 601|Drosophila melanogaster SP71 protein. Length = 601 Score = 27.5 bits (58), Expect = 6.3 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -2 Query: 180 FFSAIIL*HYAVLNTVAGKNRKCGCLYSFSYFISSHGFKPLR 55 + + ++L H++V+ T A K K C Y S + G P+R Sbjct: 327 YSNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIR 368 >AE014298-2|ABC67158.1| 715|Drosophila melanogaster CG17131-PB, isoform B protein. Length = 715 Score = 27.5 bits (58), Expect = 6.3 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -2 Query: 180 FFSAIIL*HYAVLNTVAGKNRKCGCLYSFSYFISSHGFKPLR 55 + + ++L H++V+ T A K K C Y S + G P+R Sbjct: 441 YSNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIR 482 >AE014298-1|AAZ52488.1| 715|Drosophila melanogaster CG17131-PA, isoform A protein. Length = 715 Score = 27.5 bits (58), Expect = 6.3 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -2 Query: 180 FFSAIIL*HYAVLNTVAGKNRKCGCLYSFSYFISSHGFKPLR 55 + + ++L H++V+ T A K K C Y S + G P+R Sbjct: 441 YSNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIR 482 Database: fruitfly Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 24,988,368 Number of sequences in database: 53,049 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,068,941 Number of Sequences: 53049 Number of extensions: 304923 Number of successful extensions: 541 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 534 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 541 length of database: 24,988,368 effective HSP length: 77 effective length of database: 20,903,595 effective search space used: 1045179750 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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