Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1100X
         (385 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-759|AAF54245.2|  389|Drosophila melanogaster CG17911-PA...    34   0.073
AE014297-758|AAF54244.2|  390|Drosophila melanogaster CG11735-PA...    29   1.6  
AE013599-979|AAF58868.1|  350|Drosophila melanogaster CG12133-PA...    28   4.8  
AY119115-1|AAM50975.1|  715|Drosophila melanogaster RE15579p pro...    27   6.3  
AF212322-1|AAF24495.1|  601|Drosophila melanogaster SP71 protein.      27   6.3  
AE014298-2|ABC67158.1|  715|Drosophila melanogaster CG17131-PB, ...    27   6.3  
AE014298-1|AAZ52488.1|  715|Drosophila melanogaster CG17131-PA, ...    27   6.3  

>AE014297-759|AAF54245.2|  389|Drosophila melanogaster CG17911-PA
           protein.
          Length = 389

 Score = 33.9 bits (74), Expect = 0.073
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -1

Query: 214 N*LYGLQILLRFFFRDNFVTLRGFKYSRGKEPQVRLLVFVFLFHKLTRL 68
           N ++G+ +LL F      +   GF+ + G  P + + +F+FLF  L+++
Sbjct: 258 NDIFGIPLLLNFMVSTFVICFVGFQMTVGVPPDIMIKLFLFLFSSLSQV 306


>AE014297-758|AAF54244.2|  390|Drosophila melanogaster CG11735-PA
           protein.
          Length = 390

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = -1

Query: 214 N*LYGLQILLRFFFRDNFVTLRGFKYSRGKEPQVRLLVFVFLFHKLTRL 68
           N ++G+ +LL F      +   GF+ + G  P + + +F+FL   ++++
Sbjct: 259 NDIFGIPLLLNFMVSSFVICFVGFQMTVGVPPDIVVKLFLFLVSSMSQV 307


>AE013599-979|AAF58868.1|  350|Drosophila melanogaster CG12133-PA
           protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
 Frame = +3

Query: 141 LKPRNVTKLSRKKNRNKIC--NPYN*LDVHAL--CA--AAGGSLNEKYIC 272
           L PRN+T   + + RNK+C  NP+    VH +  C    AG  L +  +C
Sbjct: 4   LHPRNMTNDQKSQYRNKLCNINPFAHELVHMVFTCCPMVAGDKLPDSRVC 53


>AY119115-1|AAM50975.1|  715|Drosophila melanogaster RE15579p
           protein.
          Length = 715

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 180 FFSAIIL*HYAVLNTVAGKNRKCGCLYSFSYFISSHGFKPLR 55
           + + ++L H++V+ T A K  K  C Y  S    + G  P+R
Sbjct: 441 YSNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIR 482


>AF212322-1|AAF24495.1|  601|Drosophila melanogaster SP71 protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 180 FFSAIIL*HYAVLNTVAGKNRKCGCLYSFSYFISSHGFKPLR 55
           + + ++L H++V+ T A K  K  C Y  S    + G  P+R
Sbjct: 327 YSNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIR 368


>AE014298-2|ABC67158.1|  715|Drosophila melanogaster CG17131-PB,
           isoform B protein.
          Length = 715

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 180 FFSAIIL*HYAVLNTVAGKNRKCGCLYSFSYFISSHGFKPLR 55
           + + ++L H++V+ T A K  K  C Y  S    + G  P+R
Sbjct: 441 YSNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIR 482


>AE014298-1|AAZ52488.1|  715|Drosophila melanogaster CG17131-PA,
           isoform A protein.
          Length = 715

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 180 FFSAIIL*HYAVLNTVAGKNRKCGCLYSFSYFISSHGFKPLR 55
           + + ++L H++V+ T A K  K  C Y  S    + G  P+R
Sbjct: 441 YSNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNITFGMMPIR 482


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,068,941
Number of Sequences: 53049
Number of extensions: 304923
Number of successful extensions: 541
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1045179750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)