Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1100X
(385 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF045641-5|AAC02577.2| 554|Caenorhabditis elegans Hypothetical ... 32 0.12
U23450-6|AAK31469.1| 790|Caenorhabditis elegans Hypothetical pr... 28 2.0
Z49936-5|CAE47467.1| 801|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z49936-4|CAE47466.1| 343|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z49936-3|CAD90174.1| 1000|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z49936-2|CAA90181.1| 586|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z49936-1|CAA90182.1| 930|Caenorhabditis elegans Hypothetical pr... 27 3.4
AY834228-1|AAV91314.1| 589|Caenorhabditis elegans Toll and inte... 27 3.4
AY834227-1|AAV91313.1| 984|Caenorhabditis elegans Toll and inte... 27 3.4
AY834226-1|AAV91312.1| 931|Caenorhabditis elegans Toll and inte... 27 3.4
Z22174-4|CAA80129.2| 361|Caenorhabditis elegans Hypothetical pr... 27 6.0
AF078784-1|AAK18967.1| 458|Caenorhabditis elegans Hypothetical ... 27 6.0
Z81094-3|CAB03151.1| 477|Caenorhabditis elegans Hypothetical pr... 26 7.9
U64843-11|AAL08038.1| 365|Caenorhabditis elegans Hypothetical p... 26 7.9
U00047-3|AAA50689.2| 225|Caenorhabditis elegans Hypothetical pr... 26 7.9
>AF045641-5|AAC02577.2| 554|Caenorhabditis elegans Hypothetical
protein F53H1.3 protein.
Length = 554
Score = 32.3 bits (70), Expect = 0.12
Identities = 13/37 (35%), Positives = 25/37 (67%)
Frame = -2
Query: 345 MSVASFIKVLLDVRPYITFMDTKFRKCISHSKNRPRL 235
+ + S ++++ D RPY T D++FR+ S S++ PR+
Sbjct: 259 VGLLSPLRIVNDFRPYFTIHDSEFREYSSKSRSPPRV 295
>U23450-6|AAK31469.1| 790|Caenorhabditis elegans Hypothetical
protein C30B5.5 protein.
Length = 790
Score = 28.3 bits (60), Expect = 2.0
Identities = 10/19 (52%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Frame = -3
Query: 224 VYVQLV-IWITNFIAVFFP 171
+Y Q+ +W+TNF+ VFFP
Sbjct: 175 IYQQVYSLWVTNFVMVFFP 193
>Z49936-5|CAE47467.1| 801|Caenorhabditis elegans Hypothetical
protein F13B10.1e protein.
Length = 801
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 369 DKFLSFYRMS---VASFIKVLLDVRPYITFMD 283
D F+S+ R + +AS IKVLL +R Y F+D
Sbjct: 580 DVFISYRRSTGNQLASLIKVLLQLRGYRVFID 611
>Z49936-4|CAE47466.1| 343|Caenorhabditis elegans Hypothetical
protein F13B10.1d protein.
Length = 343
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 369 DKFLSFYRMS---VASFIKVLLDVRPYITFMD 283
D F+S+ R + +AS IKVLL +R Y F+D
Sbjct: 125 DVFISYRRSTGNQLASLIKVLLQLRGYRVFID 156
>Z49936-3|CAD90174.1| 1000|Caenorhabditis elegans Hypothetical
protein F13B10.1c protein.
Length = 1000
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 369 DKFLSFYRMS---VASFIKVLLDVRPYITFMD 283
D F+S+ R + +AS IKVLL +R Y F+D
Sbjct: 763 DVFISYRRSTGNQLASLIKVLLQLRGYRVFID 794
>Z49936-2|CAA90181.1| 586|Caenorhabditis elegans Hypothetical
protein F13B10.1b protein.
Length = 586
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 369 DKFLSFYRMS---VASFIKVLLDVRPYITFMD 283
D F+S+ R + +AS IKVLL +R Y F+D
Sbjct: 368 DVFISYRRSTGNQLASLIKVLLQLRGYRVFID 399
>Z49936-1|CAA90182.1| 930|Caenorhabditis elegans Hypothetical
protein F13B10.1a protein.
Length = 930
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 369 DKFLSFYRMS---VASFIKVLLDVRPYITFMD 283
D F+S+ R + +AS IKVLL +R Y F+D
Sbjct: 709 DVFISYRRSTGNQLASLIKVLLQLRGYRVFID 740
>AY834228-1|AAV91314.1| 589|Caenorhabditis elegans Toll and
interleukin 1 receptordomain protein isoform f protein.
Length = 589
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 369 DKFLSFYRMS---VASFIKVLLDVRPYITFMD 283
D F+S+ R + +AS IKVLL +R Y F+D
Sbjct: 368 DVFISYRRSTGNQLASLIKVLLQLRGYRVFID 399
>AY834227-1|AAV91313.1| 984|Caenorhabditis elegans Toll and
interleukin 1 receptordomain protein isoform c protein.
Length = 984
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 369 DKFLSFYRMS---VASFIKVLLDVRPYITFMD 283
D F+S+ R + +AS IKVLL +R Y F+D
Sbjct: 763 DVFISYRRSTGNQLASLIKVLLQLRGYRVFID 794
>AY834226-1|AAV91312.1| 931|Caenorhabditis elegans Toll and
interleukin 1 receptordomain protein isoform a protein.
Length = 931
Score = 27.5 bits (58), Expect = 3.4
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -2
Query: 369 DKFLSFYRMS---VASFIKVLLDVRPYITFMD 283
D F+S+ R + +AS IKVLL +R Y F+D
Sbjct: 710 DVFISYRRSTGNQLASLIKVLLQLRGYRVFID 741
>Z22174-4|CAA80129.2| 361|Caenorhabditis elegans Hypothetical
protein K01B6.2 protein.
Length = 361
Score = 26.6 bits (56), Expect = 6.0
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Frame = -3
Query: 284 IQNFANVFLIQRTARGCT*C----VYVQLVIWITNFIAVFFPR*FCNI 153
I+ ++ + R A+ C C +Y LVI + FI+++FP + NI
Sbjct: 80 IKPLQSLAIAARFAQLCLICYDISIYTHLVISLNRFISLYFPTSYQNI 127
>AF078784-1|AAK18967.1| 458|Caenorhabditis elegans Hypothetical
protein H34I24.2 protein.
Length = 458
Score = 26.6 bits (56), Expect = 6.0
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = -2
Query: 156 HYAVLNTVAGKNRKCGCLYSFS---YFISSHGFKPLRFNRSAA*ALNHFLG 13
+Y V T CL S + YF++S GFK + S+A +N+ LG
Sbjct: 353 YYQVNQTSGAPELNLNCLASSNVEFYFLNSDGFKTPLTSGSSARVINNALG 403
>Z81094-3|CAB03151.1| 477|Caenorhabditis elegans Hypothetical
protein F58G11.4 protein.
Length = 477
Score = 26.2 bits (55), Expect = 7.9
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -2
Query: 201 DYKFYCGFFSAIIL*HYAVLNTV 133
D + CG+FS ++ YA+ T+
Sbjct: 10 DVVYLCGYFSLVVYFQYAIFTTI 32
>U64843-11|AAL08038.1| 365|Caenorhabditis elegans Hypothetical
protein K06C4.17 protein.
Length = 365
Score = 26.2 bits (55), Expect = 7.9
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -3
Query: 284 IQNFANVFLIQRTARGCT*CVYVQLVIWITNFIAVFFP---R*FCNITR 147
I+ ++ +++ T CV + ++I I +IAVF P + CN+ R
Sbjct: 133 IKAYSEIYIFPLTHATKYMCVCISIIISIQQWIAVFLPMEAKDLCNMER 181
>U00047-3|AAA50689.2| 225|Caenorhabditis elegans Hypothetical
protein ZK418.5 protein.
Length = 225
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +1
Query: 133 DCI*NRVMLQNYRGKKTAIKFVIHITSWTYTHYVQPRAVL 252
D I +++ N+ K ++FV+ W + H V R VL
Sbjct: 80 DVIGLHLLMTNFLAGKGEVRFVVGGLGWGFAHSVAHRLVL 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,366,567
Number of Sequences: 27780
Number of extensions: 165109
Number of successful extensions: 336
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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