BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1100X (385 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g59940.1 68418.m07516 DC1 domain-containing protein / UV-B li... 24 2.2 At4g38690.1 68417.m05479 1-phosphatidylinositol phosphodiesteras... 27 4.3 At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 26 7.5 At5g13950.1 68418.m01631 expressed protein 26 9.9 At4g16563.1 68417.m02506 aspartyl protease family protein contai... 26 9.9 >At5g59940.1 68418.m07516 DC1 domain-containing protein / UV-B light-insensitive protein, putative similar to ULI3 (UV-B light insensitive) [Arabidopsis thaliana] GI:17225050; contains Pfam profile PF03107: DC1 domain Length = 651 Score = 23.8 bits (49), Expect(2) = 2.2 Identities = 12/42 (28%), Positives = 18/42 (42%) Frame = +3 Query: 117 CGSFPRLYLKPRNVTKLSRKKNRNKICNPYN*LDVHALCAAA 242 CGS ++ ++ L N CN + + VH LC A Sbjct: 471 CGSLSEPFVHNGHLHPLYFDSKENHSCNACHKVTVHMLCCNA 512 Score = 22.6 bits (46), Expect(2) = 2.2 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = +3 Query: 216 DVHALCAAAGGSLNEKYICEI 278 D H L + G + N KY C+I Sbjct: 533 DEHPLTLSCGETANGKYWCDI 553 >At4g38690.1 68417.m05479 1-phosphatidylinositol phosphodiesterase-related contains weak similarity to 1-phosphatidylinositol phosphodiesterase precursor (EC 4.6.1.13) (Phosphatidylinositol diacylglycerol-lyase) (Phosphatidylinositol- specific phospholipase C) (PI-PLC). (Swiss-Prot:P34024) [Listeria monocytogenes] Length = 318 Score = 27.1 bits (57), Expect = 4.3 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = -3 Query: 311 MCVHTLPSWIQNFANVFLIQRTARGCT*CVYVQLVIWITNFI 186 MCV + I +A VF+I+ RGC +L I+ T+FI Sbjct: 261 MCVKPVTKRIHCYAKVFIIECVKRGCA----DKLQIFSTDFI 298 >At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly identical to RNA helicase [Arabidopsis thaliana] GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 671 Score = 26.2 bits (55), Expect = 7.5 Identities = 9/14 (64%), Positives = 12/14 (85%) Frame = -3 Query: 299 TLPSWIQNFANVFL 258 TLPSW++N +N FL Sbjct: 290 TLPSWVKNISNRFL 303 >At5g13950.1 68418.m01631 expressed protein Length = 939 Score = 25.8 bits (54), Expect = 9.9 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = -2 Query: 315 LDVRPYITFMDTKFRKCISHSKNRPRLHIVRVRPTSYMDYK 193 LDV+PY F++ + +K +H LH+V+ P +Y +K Sbjct: 348 LDVQPYGVFVEEEQKKLNAH-----WLHLVKDLPAAYAIWK 383 >At4g16563.1 68417.m02506 aspartyl protease family protein contains Pfam profile: PF00026 eukaryotic aspartyl protease Length = 499 Score = 25.8 bits (54), Expect = 9.9 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = -2 Query: 99 SFSYFISSHGFKPLRFNRSAA*ALNHFLGSKSK 1 SFSY + SH F R R + L F+ K K Sbjct: 251 SFSYCLVSHSFDSDRVRRPSPLILGRFVDKKEK 283 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,764,399 Number of Sequences: 28952 Number of extensions: 146645 Number of successful extensions: 287 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 280 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 287 length of database: 12,070,560 effective HSP length: 73 effective length of database: 9,957,064 effective search space used: 537681456 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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