SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1100X
         (385 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59940.1 68418.m07516 DC1 domain-containing protein / UV-B li...    24   2.2  
At4g38690.1 68417.m05479 1-phosphatidylinositol phosphodiesteras...    27   4.3  
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id...    26   7.5  
At5g13950.1 68418.m01631 expressed protein                             26   9.9  
At4g16563.1 68417.m02506 aspartyl protease family protein contai...    26   9.9  

>At5g59940.1 68418.m07516 DC1 domain-containing protein / UV-B
           light-insensitive protein, putative similar to ULI3
           (UV-B light insensitive) [Arabidopsis thaliana]
           GI:17225050; contains Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 23.8 bits (49), Expect(2) = 2.2
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +3

Query: 117 CGSFPRLYLKPRNVTKLSRKKNRNKICNPYN*LDVHALCAAA 242
           CGS    ++   ++  L      N  CN  + + VH LC  A
Sbjct: 471 CGSLSEPFVHNGHLHPLYFDSKENHSCNACHKVTVHMLCCNA 512



 Score = 22.6 bits (46), Expect(2) = 2.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 216 DVHALCAAAGGSLNEKYICEI 278
           D H L  + G + N KY C+I
Sbjct: 533 DEHPLTLSCGETANGKYWCDI 553


>At4g38690.1 68417.m05479 1-phosphatidylinositol
           phosphodiesterase-related contains weak similarity to
           1-phosphatidylinositol phosphodiesterase precursor (EC
           4.6.1.13) (Phosphatidylinositol diacylglycerol-lyase)
           (Phosphatidylinositol- specific phospholipase C)
           (PI-PLC). (Swiss-Prot:P34024) [Listeria monocytogenes]
          Length = 318

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 311 MCVHTLPSWIQNFANVFLIQRTARGCT*CVYVQLVIWITNFI 186
           MCV  +   I  +A VF+I+   RGC      +L I+ T+FI
Sbjct: 261 MCVKPVTKRIHCYAKVFIIECVKRGCA----DKLQIFSTDFI 298


>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
           identical to RNA helicase [Arabidopsis thaliana]
           GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 671

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 299 TLPSWIQNFANVFL 258
           TLPSW++N +N FL
Sbjct: 290 TLPSWVKNISNRFL 303


>At5g13950.1 68418.m01631 expressed protein 
          Length = 939

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 315 LDVRPYITFMDTKFRKCISHSKNRPRLHIVRVRPTSYMDYK 193
           LDV+PY  F++ + +K  +H      LH+V+  P +Y  +K
Sbjct: 348 LDVQPYGVFVEEEQKKLNAH-----WLHLVKDLPAAYAIWK 383


>At4g16563.1 68417.m02506 aspartyl protease family protein contains
           Pfam profile: PF00026 eukaryotic aspartyl protease
          Length = 499

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -2

Query: 99  SFSYFISSHGFKPLRFNRSAA*ALNHFLGSKSK 1
           SFSY + SH F   R  R +   L  F+  K K
Sbjct: 251 SFSYCLVSHSFDSDRVRRPSPLILGRFVDKKEK 283


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,764,399
Number of Sequences: 28952
Number of extensions: 146645
Number of successful extensions: 287
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -