Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1099
(506 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q9VZS5 Cluster: 60S ribosomal protein L28; n=13; Endopt... 110 2e-23
UniRef50_A2I410 Cluster: Ribosomal protein L28-like protein; n=8... 95 8e-19
UniRef50_Q7PP83 Cluster: ENSANGP00000014265; n=1; Anopheles gamb... 92 6e-18
UniRef50_A7RYT2 Cluster: Predicted protein; n=1; Nematostella ve... 83 3e-15
UniRef50_Q4P4F5 Cluster: Putative uncharacterized protein; n=1; ... 81 1e-14
UniRef50_P46779 Cluster: 60S ribosomal protein L28; n=44; Coelom... 78 1e-13
UniRef50_Q4KTF6 Cluster: L28; n=1; Suberites domuncula|Rep: L28 ... 70 3e-11
UniRef50_Q09JQ7 Cluster: 60S ribosomal protein L28; n=3; Ixodoid... 68 1e-10
UniRef50_A6YMN6 Cluster: Large subunit ribosomal protein 28; n=1... 63 4e-09
UniRef50_Q7Z0U0 Cluster: Ribosomal protein L28; n=2; Schistosoma... 62 5e-09
UniRef50_O82204 Cluster: 60S ribosomal protein L28-1; n=17; Magn... 62 7e-09
UniRef50_Q4WDL9 Cluster: 60S ribosomal protein L28; n=8; Pezizom... 60 3e-08
UniRef50_Q2U9I8 Cluster: RIB40 genomic DNA, SC111; n=7; Pezizomy... 60 4e-08
UniRef50_O14069 Cluster: Probable 60S ribosomal protein L28e; n=... 55 1e-06
UniRef50_Q21930 Cluster: 60S ribosomal protein L28; n=2; Caenorh... 54 1e-06
UniRef50_Q2M3Y8 Cluster: Ribosomal protein L28; n=1; Phytophthor... 51 1e-05
UniRef50_Q6C5X8 Cluster: Similarity; n=1; Yarrowia lipolytica|Re... 47 2e-04
UniRef50_Q5KLF0 Cluster: 60s ribosomal protein, putative; n=1; F... 47 2e-04
UniRef50_A0C5U4 Cluster: Chromosome undetermined scaffold_150, w... 46 5e-04
UniRef50_Q5CQC8 Cluster: 60S ribosomal protein L28; n=2; Cryptos... 46 7e-04
UniRef50_Q9GS21 Cluster: 60S ribosomal protein L28; n=2; Dictyos... 44 0.003
UniRef50_Q5AYY0 Cluster: Putative uncharacterized protein; n=1; ... 42 0.011
UniRef50_O00822 Cluster: 60S ribosomal protein L28; n=9; Trypano... 38 0.099
UniRef50_A4S554 Cluster: Ribosomal protein L28, component of cyt... 38 0.13
UniRef50_UPI00006CFBC8 Cluster: hypothetical protein TTHERM_0048... 34 1.6
UniRef50_Q4UBK1 Cluster: 60S ribosomal protein l28, putative; n=... 34 1.6
UniRef50_Q245G5 Cluster: Cyclin, N-terminal domain containing pr... 33 2.8
UniRef50_A6M072 Cluster: Major facilitator superfamily MFS_1; n=... 33 3.7
UniRef50_A7AMH8 Cluster: Putative uncharacterized protein; n=1; ... 33 3.7
UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:... 33 4.9
UniRef50_A0D4U2 Cluster: Chromosome undetermined scaffold_38, wh... 32 6.5
UniRef50_Q8GCM9 Cluster: ORF228; n=2; Mycoplasma|Rep: ORF228 - M... 32 8.6
>UniRef50_Q9VZS5 Cluster: 60S ribosomal protein L28; n=13;
Endopterygota|Rep: 60S ribosomal protein L28 -
Drosophila melanogaster (Fruit fly)
Length = 144
Score = 110 bits (264), Expect = 2e-23
Identities = 47/76 (61%), Positives = 61/76 (80%)
Frame = +2
Query: 41 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 220
SS LNW+IIRNNNAFL+KKR++KKPFS EPNN+ ++ S+RY+G++HKK +GVV D+KG
Sbjct: 4 SSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKG 63
Query: 221 FTVVYKKAKATKSPLK 268
FT V KK K + P K
Sbjct: 64 FTAVLKKGKYAQRPAK 79
Score = 73.7 bits (173), Expect = 2e-12
Identities = 36/67 (53%), Positives = 49/67 (73%)
Frame = +1
Query: 211 QEGIHSSVQESKGYQKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASA 390
++G + +++ K Q+PAKN +R FKAG RRSL K+K LL + YR DL +A LRRASA
Sbjct: 61 KKGFTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASA 120
Query: 391 ILRSQRP 411
+LRSQ+P
Sbjct: 121 VLRSQKP 127
>UniRef50_A2I410 Cluster: Ribosomal protein L28-like protein; n=8;
Neoptera|Rep: Ribosomal protein L28-like protein -
Maconellicoccus hirsutus (hibiscus mealybug)
Length = 139
Score = 95.1 bits (226), Expect = 8e-19
Identities = 45/78 (57%), Positives = 54/78 (69%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 217
MS+ L WMI RNNNA+L+KKR+IKKPFS EP N+ N+ SFRYNGL+ K V V D K
Sbjct: 1 MSADLYWMITRNNNAYLLKKRDIKKPFSTEPGNLKNVASFRYNGLVQPKTVDVRAAKDGK 60
Query: 218 GFTVVYKKAKATKSPLKT 271
GF V K+AK P K+
Sbjct: 61 GFVVTTKRAKQQNKPGKS 78
Score = 57.2 bits (132), Expect = 2e-07
Identities = 29/65 (44%), Positives = 39/65 (60%)
Frame = +1
Query: 214 EGIHSSVQESKGYQKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAI 393
+G + + +K KP K+ I AG RRSLYK++R L YR DL + LR+ASAI
Sbjct: 60 KGFVVTTKRAKQQNKPGKSNISVTMSAGPRRSLYKLRRYLDGGKYRKDLTQVALRKASAI 119
Query: 394 LRSQR 408
L SQ+
Sbjct: 120 LESQK 124
>UniRef50_Q7PP83 Cluster: ENSANGP00000014265; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000014265 - Anopheles gambiae
str. PEST
Length = 158
Score = 92.3 bits (219), Expect = 6e-18
Identities = 41/90 (45%), Positives = 60/90 (66%)
Frame = +2
Query: 32 VKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPD 211
+ SS LNW+I+R++NAFL+K+R+I+KPFS EP N+TNL SFRY+GL+H K + + +
Sbjct: 1 IMASSHLNWLIVRDHNAFLLKRRDIRKPFSTEPGNLTNLSSFRYSGLVHHKTI-TITPAE 59
Query: 212 RKGFTVVYKKAKATKSPLKT*SAVHSRQVP 301
+KG VY + K P K V ++ P
Sbjct: 60 KKGVNFVYNRKKVLNKPAKAPVKVTLKEGP 89
Score = 66.1 bits (154), Expect = 4e-10
Identities = 33/67 (49%), Positives = 43/67 (64%)
Frame = +1
Query: 211 QEGIHSSVQESKGYQKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASA 390
++G++ K KPAK ++ K G RR+L K+ ++KAN YR DL A LRRASA
Sbjct: 60 KKGVNFVYNRKKVLNKPAKAPVKVTLKEGPRRTLKKIANMMKANRYRADLRGAALRRASA 119
Query: 391 ILRSQRP 411
ILRSQRP
Sbjct: 120 ILRSQRP 126
>UniRef50_A7RYT2 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 137
Score = 83.4 bits (197), Expect = 3e-15
Identities = 40/77 (51%), Positives = 51/77 (66%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 217
MSS L W IIRNN+ FLV+ + K +KEPNNVT L++F+YNGL++KK VGV P K
Sbjct: 1 MSSDLQWSIIRNNSCFLVRSQG--KTLTKEPNNVTGLNAFKYNGLVNKKVVGVDAAPSGK 58
Query: 218 GFTVVYKKAKATKSPLK 268
G + +K KA P K
Sbjct: 59 GVVITTRKNKAANKPGK 75
Score = 48.0 bits (109), Expect = 1e-04
Identities = 24/69 (34%), Positives = 40/69 (57%)
Frame = +1
Query: 205 P*QEGIHSSVQESKGYQKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRA 384
P +G+ + +++K KP K + + +RR+L ++ + N+YR DL +RRA
Sbjct: 55 PSGKGVVITTRKNKAANKPGKIMNKITISRDSRRTLKTIEGVCDKNYYRMDLKDPAMRRA 114
Query: 385 SAILRSQRP 411
AILRSQ+P
Sbjct: 115 CAILRSQKP 123
>UniRef50_Q4P4F5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 221
Score = 81.0 bits (191), Expect = 1e-14
Identities = 36/92 (39%), Positives = 58/92 (63%)
Frame = +2
Query: 41 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 220
S L W+++RNN++F+VK++ I + FS+EP N+ LHS++Y+GL++ KAVG+ KG
Sbjct: 3 SQDLQWLLVRNNSSFIVKQKGIGRIFSREPRNLVQLHSYKYSGLVNAKAVGIEAAKSGKG 62
Query: 221 FTVVYKKAKATKSPLKT*SAVHSRQVPGGHCT 316
+ K AK + S +K V + + GG T
Sbjct: 63 VVITTKNAKQSSSAIKKTVNVATLKKGGGRRT 94
>UniRef50_P46779 Cluster: 60S ribosomal protein L28; n=44;
Coelomata|Rep: 60S ribosomal protein L28 - Homo sapiens
(Human)
Length = 137
Score = 78.2 bits (184), Expect = 1e-13
Identities = 36/75 (48%), Positives = 50/75 (66%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 217
MS+ L WM++RN ++FL+K+ K+ +S EPNN+ +SFRYNGLIH+K VGV D K
Sbjct: 1 MSAHLQWMVVRNCSSFLIKRN--KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGK 58
Query: 218 GFTVVYKKAKATKSP 262
G VV K+ + P
Sbjct: 59 GVVVVIKRRSGQRKP 73
Score = 59.3 bits (137), Expect = 5e-08
Identities = 26/67 (38%), Positives = 42/67 (62%)
Frame = +1
Query: 214 EGIHSSVQESKGYQKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAI 393
+G+ ++ G +KPA + +R AR +L ++ +++ N YR DL A +RRASAI
Sbjct: 58 KGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAI 117
Query: 394 LRSQRPI 414
LRSQ+P+
Sbjct: 118 LRSQKPV 124
>UniRef50_Q4KTF6 Cluster: L28; n=1; Suberites domuncula|Rep: L28 -
Suberites domuncula (Sponge)
Length = 136
Score = 70.1 bits (164), Expect = 3e-11
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 3/80 (3%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIKKP---FSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 208
MS+ L W +I+N+++FL++++ + F+ EPNNV N +SF++NGL++KK VGV
Sbjct: 1 MSAELQWELIKNSSSFLLRRKGPRGSGVTFTTEPNNVMNKNSFKFNGLVNKKVVGVSSAA 60
Query: 209 DRKGFTVVYKKAKATKSPLK 268
D KG K++K P K
Sbjct: 61 DNKGVLFKTKRSKVVSKPAK 80
Score = 54.8 bits (126), Expect = 1e-06
Identities = 27/66 (40%), Positives = 37/66 (56%)
Frame = +1
Query: 214 EGIHSSVQESKGYQKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAI 393
+G+ + SK KPAK +R RR+ +K+ L+ YR DL + +RRASAI
Sbjct: 63 KGVLFKTKRSKVVSKPAKMFVRATLSKDRRRAFKSIKKNLECTEYRPDLAELAVRRASAI 122
Query: 394 LRSQRP 411
L SQRP
Sbjct: 123 LSSQRP 128
>UniRef50_Q09JQ7 Cluster: 60S ribosomal protein L28; n=3;
Ixodoidea|Rep: 60S ribosomal protein L28 - Argas
monolakensis
Length = 142
Score = 67.7 bits (158), Expect = 1e-10
Identities = 33/77 (42%), Positives = 47/77 (61%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 217
+S + WM++RN ++FLVKKRNIKK FS +P N +++ R+ G I K+A+ V + K
Sbjct: 2 VSRTYRWMVVRNCSSFLVKKRNIKKWFSTDPLNPKGVYANRFAGTIKKRALTVEPHSSGK 61
Query: 218 GFTVVYKKAKATKSPLK 268
G T VY K P K
Sbjct: 62 GVTFVYLAHKGATKPAK 78
Score = 49.2 bits (112), Expect = 5e-05
Identities = 27/58 (46%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +1
Query: 244 KGYQKPAKNLIRRPFKAGARRSLYKVKRLLKA-NHYRTDLCKATLRRASAILRSQRPI 414
KG KPAK L R G RR++ ++ +K +YR DL + RRASAIL+SQR I
Sbjct: 71 KGATKPAKRLKRVQLVKGPRRTMVSIRNWIKGMGYYRRDLRRVCQRRASAILKSQRAI 128
>UniRef50_A6YMN6 Cluster: Large subunit ribosomal protein 28; n=19;
Neodiplogasteridae|Rep: Large subunit ribosomal protein
28 - Pristionchus sp. 11 RS5228
Length = 127
Score = 62.9 bits (146), Expect = 4e-09
Identities = 31/70 (44%), Positives = 43/70 (61%)
Frame = +2
Query: 62 IIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKK 241
+IRNN+AFL ++R I+K FS+EP N+ ++S YNGL + KAVGV D K V KK
Sbjct: 2 VIRNNSAFLRRQRGIQKAFSREPLNLKGINSPNYNGLTNNKAVGVTLAEDNKSVVVSVKK 61
Query: 242 AKATKSPLKT 271
P ++
Sbjct: 62 TGKKNLPAQS 71
>UniRef50_Q7Z0U0 Cluster: Ribosomal protein L28; n=2; Schistosoma
japonicum|Rep: Ribosomal protein L28 - Schistosoma
japonicum (Blood fluke)
Length = 116
Score = 62.5 bits (145), Expect = 5e-09
Identities = 32/77 (41%), Positives = 45/77 (58%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 217
MSS L W +I+NN+ FL+K+ + FS++P N+ N + FRY G +HKKA+G+ E K
Sbjct: 1 MSSHLIWDLIKNNHCFLMKRG--PECFSRDPLNLKNKNCFRYCGPVHKKAIGIKEERYGK 58
Query: 218 GFTVVYKKAKATKSPLK 268
G V K P K
Sbjct: 59 GVVVTTKNVAKDHKPAK 75
>UniRef50_O82204 Cluster: 60S ribosomal protein L28-1; n=17;
Magnoliophyta|Rep: 60S ribosomal protein L28-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 143
Score = 62.1 bits (144), Expect = 7e-09
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Frame = +2
Query: 50 LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV-VENPDRK 217
L W I++NNN FLVK + N K FSKE NN+TN+HS++++GL +KK V + + D+
Sbjct: 8 LIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQA 67
Query: 218 GFTVVYKKAKATKSPLKT*SAVHSRQVP 301
K K K L ++ ++ P
Sbjct: 68 VVLATTKTKKQNKPKLSVNKSILKKEFP 95
>UniRef50_Q4WDL9 Cluster: 60S ribosomal protein L28; n=8;
Pezizomycotina|Rep: 60S ribosomal protein L28 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 157
Score = 60.1 bits (139), Expect = 3e-08
Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIK-KPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDR 214
+SS L W I RN NAFLVK+R FS++P N+ N SF+Y G + KAVG V+ +
Sbjct: 8 VSSDLVWQITRNQNAFLVKRRTGGGSQFSRDPLNLQNKQSFKYAGYANTKAVG-VQATEN 66
Query: 215 KGFTVVYKKAKATKSPLK 268
G V+ KK + P K
Sbjct: 67 GGVVVITKKPGNPQQPAK 84
Score = 38.3 bits (85), Expect = 0.099
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +1
Query: 253 QKPAKNLIRRPFKAGAR-RSLYK-VKRLLKANHYRTDLCKATLRRASAILRSQRP 411
Q+PAKNL+ + A R +YK V N YR DL + + R SAI RSQ+P
Sbjct: 80 QQPAKNLVSVSWGPNAATRKIYKAVASKTAKNGYRADLREDAVARVSAIRRSQKP 134
>UniRef50_Q2U9I8 Cluster: RIB40 genomic DNA, SC111; n=7;
Pezizomycotina|Rep: RIB40 genomic DNA, SC111 -
Aspergillus oryzae
Length = 157
Score = 59.7 bits (138), Expect = 4e-08
Identities = 32/78 (41%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIK-KPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDR 214
+SS L W + RN NAFLVK+ + FS++P N+ N HSF+Y G + KA+G V+ +
Sbjct: 8 VSSDLVWQLTRNQNAFLVKRNSGGGSQFSRDPLNLQNKHSFKYAGYANTKAIG-VQPTEN 66
Query: 215 KGFTVVYKKAKATKSPLK 268
G V+ KK+ + P K
Sbjct: 67 GGVVVLTKKSGNAQQPGK 84
Score = 39.9 bits (89), Expect = 0.032
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +1
Query: 217 GIHSSVQESKGYQKPAKNLIRRPF--KAGARRSLYKVKRLLKANHYRTDLCKATLRRASA 390
G+ ++S Q+P KN +R F KA R+ V N YR DL + + R SA
Sbjct: 68 GVVVLTKKSGNAQQPGKNAVRVTFGPKASTRKIYKGVADKTAKNGYRADLREDAVARVSA 127
Query: 391 ILRSQRP 411
I RSQ+P
Sbjct: 128 IRRSQKP 134
>UniRef50_O14069 Cluster: Probable 60S ribosomal protein L28e; n=1;
Schizosaccharomyces pombe|Rep: Probable 60S ribosomal
protein L28e - Schizosaccharomyces pombe (Fission yeast)
Length = 134
Score = 54.8 bits (126), Expect = 1e-06
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +2
Query: 32 VKMSSSLNWMIIRNNNAFLVKKRNIKK-PFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 208
+ +S+ L W +IR+NN FLVK+ F++EP NV+ ++ R++GL + KAVGV N
Sbjct: 1 MSVSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANS 60
Query: 209 DRKGFTVVYKKAKATKSPLK 268
R + K + P K
Sbjct: 61 PRGVVLITKTNPKNAQKPAK 80
Score = 40.7 bits (91), Expect = 0.019
Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = +1
Query: 244 KGYQKPAKNLIRRPFKAGAR-RSLYK-VKRLLKANHYRTDLCKATLRRASAILRSQRP 411
K QKPAK L R+ A A R YK + + YR DL K ++ RASAIL SQRP
Sbjct: 73 KNAQKPAK-LFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRP 129
>UniRef50_Q21930 Cluster: 60S ribosomal protein L28; n=2;
Caenorhabditis|Rep: 60S ribosomal protein L28 -
Caenorhabditis elegans
Length = 126
Score = 54.4 bits (125), Expect = 1e-06
Identities = 33/87 (37%), Positives = 47/87 (54%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 217
MS +L W +IRNN+AFL +R I K FS E N+ ++S +Y+GL +K A+ V + K
Sbjct: 1 MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDV--SAAAK 58
Query: 218 GFTVVYKKAKATKSPLKT*SAVHSRQV 298
G V K K + T S + V
Sbjct: 59 GVVVSTKNEKGRPAKAVTTSTLSKTPV 85
>UniRef50_Q2M3Y8 Cluster: Ribosomal protein L28; n=1; Phytophthora
infestans|Rep: Ribosomal protein L28 - Phytophthora
infestans (Potato late blight fungus)
Length = 139
Score = 51.2 bits (117), Expect = 1e-05
Identities = 31/85 (36%), Positives = 49/85 (57%)
Frame = +2
Query: 41 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 220
S +L W++ +N ++FLVK+ F++E N+ N + +Y+GL KAV + D+K
Sbjct: 3 SDTLTWLLTKNTSSFLVKRNG--NEFAREKFNLLNRNCRKYSGLASTKAVD-ISISDKK- 58
Query: 221 FTVVYKKAKATKSPLKT*SAVHSRQ 295
T+ K KATK P K +AV R+
Sbjct: 59 VTLTTKIEKATKKPAKAQNAVPLRK 83
Score = 34.3 bits (75), Expect = 1.6
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 244 KGYQKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAI 393
K +KPAK P + GAR ++ + N+YR DL KA L + S +
Sbjct: 67 KATKKPAKAQNAVPLRKGARGGANTIRANISRNYYRRDLKKAALAKWSRL 116
>UniRef50_Q6C5X8 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
Similarity - Yarrowia lipolytica (Candida lipolytica)
Length = 183
Score = 47.2 bits (107), Expect = 2e-04
Identities = 25/78 (32%), Positives = 39/78 (50%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 217
+S+ W ++ NA+LVK++ I S++P + NL + +GL H KAVGV
Sbjct: 48 VSNDFIWECTKSTNAYLVKRKGIDTTLSRDPYALNNLSTHYESGLSHDKAVGVHYCKPSG 107
Query: 218 GFTVVYKKAKATKSPLKT 271
V+ K K P K+
Sbjct: 108 KICVITKVVKNANKPAKS 125
>UniRef50_Q5KLF0 Cluster: 60s ribosomal protein, putative; n=1;
Filobasidiella neoformans|Rep: 60s ribosomal protein,
putative - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 156
Score = 47.2 bits (107), Expect = 2e-04
Identities = 29/81 (35%), Positives = 44/81 (54%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 217
MSS L W+++RN N+F VK + FS+E N+ N + +Y+GL + K V + +P
Sbjct: 1 MSSDLTWLLVRNWNSFQVKGGH-GPVFSREKGNLLNKSAHKYSGLANSKVVSI--HPSAA 57
Query: 218 GFTVVYKKAKATKSPLKT*SA 280
G + K KA P + SA
Sbjct: 58 G-GITITKIKADAKPNQVASA 77
>UniRef50_A0C5U4 Cluster: Chromosome undetermined scaffold_150,
whole genome shotgun sequence; n=4; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_150,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 147
Score = 46.0 bits (104), Expect = 5e-04
Identities = 22/54 (40%), Positives = 32/54 (59%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVV 199
MS + W +++ NNAFLVK+ + S +P N T + ++ G I K AVGVV
Sbjct: 1 MSQQVLWEVVKGNNAFLVKRNGL--TLSTDPFNNTGVQTYSSTGFISKNAVGVV 52
>UniRef50_Q5CQC8 Cluster: 60S ribosomal protein L28; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L28 -
Cryptosporidium parvum Iowa II
Length = 127
Score = 45.6 bits (103), Expect = 7e-04
Identities = 24/72 (33%), Positives = 42/72 (58%)
Frame = +2
Query: 41 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 220
S+ L W ++ N +F+ K+N F+ EP N+ NL++ +Y+GL ++++ + P+ G
Sbjct: 3 STELLWQCVKKNTSFI--KKNNGFTFTSEPFNIMNLNTLKYSGLAARRSISMDLVPNSNG 60
Query: 221 FTVVYKKAKATK 256
V K AK TK
Sbjct: 61 KLV--KNAKITK 70
>UniRef50_Q9GS21 Cluster: 60S ribosomal protein L28; n=2;
Dictyostelium discoideum|Rep: 60S ribosomal protein L28
- Dictyostelium discoideum (Slime mold)
Length = 132
Score = 43.6 bits (98), Expect = 0.003
Identities = 21/53 (39%), Positives = 29/53 (54%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV 196
MS L W II+ NNAFL + S EP N+ N +S +Y+GL + + V
Sbjct: 1 MSQDLVWSIIKKNNAFLKSSHGL--TLSAEPGNLRNKNSLKYSGLARRTTIDV 51
>UniRef50_Q5AYY0 Cluster: Putative uncharacterized protein; n=1;
Emericella nidulans|Rep: Putative uncharacterized
protein - Emericella nidulans (Aspergillus nidulans)
Length = 192
Score = 41.5 bits (93), Expect = 0.011
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = +2
Query: 38 MSSSLNWMIIRNNNAFLVKKR-NIKKPFSKEPNNVTNLHSFR 160
+SS L W + RN NA+LVK+ + FS++P NV N HSF+
Sbjct: 8 VSSDLVWQLTRNQNAYLVKRNTHGGVQFSRDPLNVLNKHSFK 49
Score = 34.7 bits (76), Expect = 1.2
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1
Query: 253 QKPAKNLIRRPFKAGA-RRSLYK-VKRLLKANHYRTDLCKATLRRASAILRSQR 408
Q+PAK+L + GA R +YK V N YR DL + + R SAI RSQ+
Sbjct: 115 QQPAKSLAVVTYGPGASNRKIYKGVADRTAKNGYRADLRQEAVSRVSAIRRSQK 168
>UniRef50_O00822 Cluster: 60S ribosomal protein L28; n=9;
Trypanosomatidae|Rep: 60S ribosomal protein L28 -
Trypanosoma cruzi
Length = 146
Score = 38.3 bits (85), Expect = 0.099
Identities = 24/74 (32%), Positives = 36/74 (48%)
Frame = +2
Query: 41 SSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 220
S+ L W+++R N+ FL K+ I+ S +P N + R+ G ++ KA V DR
Sbjct: 4 STDLQWLLVRQNSKFLQKRNGIR--LSSDPFNNNANWTKRHAGFLNTKAAVVKTKGDR-- 59
Query: 221 FTVVYKKAKATKSP 262
V K KA P
Sbjct: 60 ILVTTKDGKAGNKP 73
>UniRef50_A4S554 Cluster: Ribosomal protein L28, component of
cytosolic 80S ribosome and 60S large subunit; n=1;
Ostreococcus lucimarinus CCE9901|Rep: Ribosomal protein
L28, component of cytosolic 80S ribosome and 60S large
subunit - Ostreococcus lucimarinus CCE9901
Length = 121
Score = 37.9 bits (84), Expect = 0.13
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = +2
Query: 32 VKMSSSLNWMIIRNNNAFL-VKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 208
V S W + + +NAF FS EP NVT SFR +GL + K + + E+
Sbjct: 5 VPASDDFLWQVTKKHNAFTRASTSGHGARFSAEPGNVTAEVSFRASGLANAKTIDIREHD 64
Query: 209 DRKG 220
KG
Sbjct: 65 GGKG 68
>UniRef50_UPI00006CFBC8 Cluster: hypothetical protein
TTHERM_00487140; n=1; Tetrahymena thermophila SB210|Rep:
hypothetical protein TTHERM_00487140 - Tetrahymena
thermophila SB210
Length = 294
Score = 34.3 bits (75), Expect = 1.6
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +2
Query: 44 SSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVT 142
S L W I++NNNAFLVK + F+ +P +VT
Sbjct: 2 SQLVWEIVKNNNAFLVKNNGV--AFTTDPFSVT 32
>UniRef50_Q4UBK1 Cluster: 60S ribosomal protein l28, putative; n=2;
Theileria|Rep: 60S ribosomal protein l28, putative -
Theileria annulata
Length = 150
Score = 34.3 bits (75), Expect = 1.6
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +2
Query: 50 LNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGL 172
L W ++RNN+AFL K R FS E +N+ + HS R+ L
Sbjct: 20 LLWELVRNNHAFLKKSRT--TTFSLESHNLLSKHSPRFTVL 58
>UniRef50_Q245G5 Cluster: Cyclin, N-terminal domain containing
protein; n=1; Tetrahymena thermophila SB210|Rep: Cyclin,
N-terminal domain containing protein - Tetrahymena
thermophila SB210
Length = 353
Score = 33.5 bits (73), Expect = 2.8
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +2
Query: 35 KMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNN-VTN-LHSFRYNGLIHKKAVGVVE 202
K S LNW + N + K+NIK K+ NN +TN L F +N I+K+ + ++E
Sbjct: 36 KKKSYLNWQGCKKINNKQINKQNIKATQIKKKNNQLTNSLLGFSFNQSINKQIIQLLE 93
>UniRef50_A6M072 Cluster: Major facilitator superfamily MFS_1; n=5;
Bacteria|Rep: Major facilitator superfamily MFS_1 -
Clostridium beijerinckii NCIMB 8052
Length = 398
Score = 33.1 bits (72), Expect = 3.7
Identities = 18/46 (39%), Positives = 28/46 (60%)
Frame = -3
Query: 261 GLLVAFAFLYTTVNPFLSGFSTTPTAFL*IKPLYLKEWRLVTLFGS 124
GL +AFA++ TT P L GF+ + T+ + I P +L + L+ L S
Sbjct: 338 GLQIAFAYIGTTFMPPLLGFTASKTSIV-IYPYFLIAYILIMLISS 382
>UniRef50_A7AMH8 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 146
Score = 33.1 bits (72), Expect = 3.7
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +2
Query: 50 LNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 208
L W +I+ NNA++ K + + F+KE N+ H+ Y+GL+ + + +P
Sbjct: 27 LVWELIKKNNAYIFKSGH--ETFTKERYNLMARHTPMYSGLMQNSVMNLELSP 77
>UniRef50_Q09F08 Cluster: Ymf77; n=1; Tetrahymena pigmentosa|Rep:
Ymf77 - Tetrahymena pigmentosa
Length = 1260
Score = 32.7 bits (71), Expect = 4.9
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 50 LNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDR 214
L W+ + NNN FL K N+K + N+ N + + N I +GV++ D+
Sbjct: 161 LFWIKLNNNNIFLKKNNNLKNLKNLNLKNLKNSINNK-NNFIKINEIGVIDKKDK 214
>UniRef50_A0D4U2 Cluster: Chromosome undetermined scaffold_38, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_38,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 131
Score = 32.3 bits (70), Expect = 6.5
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 250 YQKPAKNLIRRPFKAGARRSLYKVKRLLKAN 342
Y++ N +++ FK GA +SL KRL+KAN
Sbjct: 66 YKRKILNKLKKRFKMGAHKSLRMKKRLIKAN 96
>UniRef50_Q8GCM9 Cluster: ORF228; n=2; Mycoplasma|Rep: ORF228 -
Mycoplasma fermentans
Length = 228
Score = 31.9 bits (69), Expect = 8.6
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = +2
Query: 56 WMIIRNNNAFLVKKRNIKKPFSKEP--NNVTNLHSFRYNGLIHKK--AVGVVENPDRKGF 223
WM + N + L+K+ N+K P ++ N+ +F++NG ++++ V V+ N +
Sbjct: 10 WMSLVNKDNLLIKEENLKPKKIVFPLIGSIINVQAFKFNGELYRQWNGVKVLRNTPQHYV 69
Query: 224 TVVYK 238
+YK
Sbjct: 70 LFMYK 74
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 472,583,163
Number of Sequences: 1657284
Number of extensions: 9420804
Number of successful extensions: 24747
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 24004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24722
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 30528237263
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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