Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1099
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    55   7e-09
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    31   0.099
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    26   2.8  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   2.8  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   4.9  
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2...    25   4.9  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   8.6  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 54.8 bits (126), Expect = 7e-09
 Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
 Frame = +2

Query: 32  VKMSSSLNWMIIRNNNAFLVKKRNIKK-PFSKEPNNVTNLHSFRYNGLIHKKAVGVVENP 208
           + +S+ L W +IR+NN FLVK+       F++EP NV+  ++ R++GL + KAVGV  N 
Sbjct: 1   MSVSNDLIWQVIRDNNRFLVKRPEFGGIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANS 60

Query: 209 DRKGFTVVYKKAKATKSPLK 268
            R    +     K  + P K
Sbjct: 61  PRGVVLITKTNPKNAQKPAK 80



 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +1

Query: 244 KGYQKPAKNLIRRPFKAGAR-RSLYK-VKRLLKANHYRTDLCKATLRRASAILRSQRP 411
           K  QKPAK L R+   A A  R  YK +   +    YR DL K ++ RASAIL SQRP
Sbjct: 73  KNAQKPAK-LFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRP 129


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 31.1 bits (67), Expect = 0.099
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -2

Query: 235 VHYCESLPVRVLHDTNSFLVNQAVVPEGVEVSHIVRLLAERLFDIALLH 89
           +HYC S  +  LHDT   LV       G + S +++     + D  L H
Sbjct: 251 IHYCSSSSLSYLHDTERALVGSLTDSYGFKKSGLIKKTISLMIDGRLHH 299


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 276 D*VFSGLLVAFAFLYTTVNPFLSGFS 199
           D V S +L AFA +  T  P+LS FS
Sbjct: 831 DSVESTILAAFALVTDTTTPYLSDFS 856


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +2

Query: 71  NNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHK-KAVGVVENPDRKGFTVVYKKAK 247
           NN ++L+KK+   K     P+ V     +  NG+  K  A   V  P RK     +   +
Sbjct: 185 NNKSYLLKKKRFLKEVGNSPSAV-YCRYYNANGICGKGAACRFVHEPTRKTICPKFLNGR 243

Query: 248 ATKS 259
             K+
Sbjct: 244 CNKA 247


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/33 (36%), Positives = 22/33 (66%)
 Frame = +1

Query: 175 SQESCWCRGEP*QEGIHSSVQESKGYQKPAKNL 273
           S +S W   +P  + IHSSVQE++G+ + + ++
Sbjct: 2   SNKSAW---QPQFDEIHSSVQEAEGFLQSSNDV 31


>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 44  SSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLH 151
           S ++ + + NNN ++V + +I+ P+S    +   LH
Sbjct: 415 SQVHSLYLSNNNPYMVLQPDIQSPYSLIAYHANGLH 450


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 192 PTAFL*IKPLYLKEWRLVTLFGSLLN 115
           PT+F  IKPL  + +R+  L+  LL+
Sbjct: 347 PTSFGKIKPLGFERFRICELYAELLH 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,933,947
Number of Sequences: 5004
Number of extensions: 38294
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)