Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1099
(506 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869 60 1e-09
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116 58 4e-09
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650 57 7e-09
09_02_0203 - 5746068-5746307,5746469-5746729,5746833-5748239,574... 29 2.1
04_03_0582 + 17528335-17529790,17529913-17531651,17531814-175320... 29 2.1
02_04_0067 - 19425019-19425288,19425393-19425647,19425766-194259... 29 2.1
09_02_0336 - 7397745-7398308,7398813-7400723 29 2.8
03_05_0394 + 23758392-23758625,23759097-23759273,23759349-237594... 29 2.8
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 27 6.5
05_04_0210 + 19082778-19082940,19083806-19083875,19084172-190842... 27 6.5
01_01_1190 + 9463973-9465732,9466210-9466440,9467664-9467793,946... 27 6.5
05_02_0129 - 6897189-6897448,6897581-6898063,6898409-6898604 27 8.7
01_04_0020 + 15142402-15143421 27 8.7
>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
Length = 145
Score = 60.1 bits (139), Expect = 1e-09
Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Frame = +2
Query: 47 SLNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 217
SL W +++ NN+FLVK+ N K FSKEPNN+ N+HS++++GL +KK V V+ K
Sbjct: 7 SLVWELVKKNNSFLVKQFGNGNAKVQFSKEPNNLYNVHSYKHSGLANKKTV-TVQPASGK 65
Query: 218 GFTVVYKKAKATK 256
VV K K
Sbjct: 66 ETAVVLSTTKTEK 78
Score = 33.9 bits (74), Expect = 0.075
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +1
Query: 229 SVQESKGYQKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 402
S +++ KPA + + R+ VK + N+YR DL K L R SA+ RS
Sbjct: 72 STTKTEKQNKPASLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRS 129
>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
Length = 147
Score = 58.0 bits (134), Expect = 4e-09
Identities = 30/77 (38%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Frame = +2
Query: 50 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 220
L W I++ NN FLVK+ N K F+KEPNN+ N+HS++++GL +KK V + + +
Sbjct: 8 LFWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGGKDA 67
Query: 221 FTVV-YKKAKATKSPLK 268
V+ K K +P K
Sbjct: 68 AVVLSTTKTKKQNAPAK 84
Score = 33.9 bits (74), Expect = 0.075
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +1
Query: 229 SVQESKGYQKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 402
S ++K PAK + + R+ VK + N+YR DL K L R S++ RS
Sbjct: 72 STTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129
>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
Length = 147
Score = 57.2 bits (132), Expect = 7e-09
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Frame = +2
Query: 50 LNWMIIRNNNAFLVKK---RNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 220
L W I++ NN FLVK+ N K F+KEPNN+ N+HS++++GL +KK V ++ K
Sbjct: 8 LIWEIVKKNNCFLVKQFGNSNAKVQFTKEPNNLYNVHSYKHSGLANKKTV-TIQPSGVKD 66
Query: 221 FTVVYKKAKATK 256
VV K K
Sbjct: 67 AAVVLSTTKTKK 78
Score = 33.9 bits (74), Expect = 0.075
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +1
Query: 229 SVQESKGYQKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRS 402
S ++K PAK + + R+ VK + N+YR DL K L R S++ RS
Sbjct: 72 STTKTKKQNAPAKLYHKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRS 129
>09_02_0203 -
5746068-5746307,5746469-5746729,5746833-5748239,
5748588-5748714,5748800-5749119,5749202-5749963,
5750749-5750898,5751007-5751096,5751196-5751340,
5751440-5751617,5751753-5752448,5752555-5752753
Length = 1524
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/68 (25%), Positives = 32/68 (47%)
Frame = +1
Query: 25 LNRKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLLQVQRLDSQESCWCRGE 204
L+ +N++++ H + Q I CE++ + G LQ L+ + SC GE
Sbjct: 691 LDSQNILISMSSQHIRNQAI-CEQSHLSRITYYGYFDTSLGRYLQDSLLNEKHSCLSCGE 749
Query: 205 P*QEGIHS 228
P + ++S
Sbjct: 750 PPEAHMYS 757
>04_03_0582 +
17528335-17529790,17529913-17531651,17531814-17532035,
17532062-17533525
Length = 1626
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +2
Query: 29 TVKMSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFR 160
T++ SS+L WM+I + N L + + FSK P T + +FR
Sbjct: 582 TIRQSSALPWMVIGDFNETLWQFEH----FSKNPRCETQMQNFR 621
>02_04_0067 -
19425019-19425288,19425393-19425647,19425766-19425937,
19426069-19426302,19426523-19426656,19427663-19427746,
19428355-19428645,19428788-19429120,19429317-19429390,
19429464-19429644,19429993-19430096,19430232-19430392,
19430727-19431040,19431583-19431864,19432431-19432732,
19433176-19433266,19433368-19433421,19438917-19438993,
19439081-19439240,19439410-19439494,19439574-19440130
Length = 1404
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 216 RDSQ*CTRKQRLPKAR*KLNPPSIQGRCQEVTVQSE-EVVKG*PLP 350
RD+ RKQR R + P+++ R + V V+++ +VV G PLP
Sbjct: 106 RDNLRLLRKQRRRMERVGVRQPTVEVRWRNVRVEADCQVVSGKPLP 151
>09_02_0336 - 7397745-7398308,7398813-7400723
Length = 824
Score = 28.7 bits (61), Expect = 2.8
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +1
Query: 34 KNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQ 135
KN ++ L+ +QCI C + ++ K++++GA++
Sbjct: 184 KNEILPPLEFSDLEQCIECIKGKFVKSIKKGAKR 217
>03_05_0394 +
23758392-23758625,23759097-23759273,23759349-23759453,
23759640-23759681,23759763-23759960,23760037-23760165,
23760248-23760377,23761119-23761179,23761241-23761322,
23761402-23761653
Length = 469
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 148 EVSHIVRLLAERLFDIALLHKECIVVADDHPVQ*RRH 38
+VSHI+ + E+ D+AL + EC + + H Q H
Sbjct: 361 KVSHIIVVACEKCLDLALKYVECCLKHNQHFEQNEPH 397
>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/50 (28%), Positives = 21/50 (42%)
Frame = +2
Query: 71 NNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 220
N A + K KKP ++P +Y GL+ KK+ N + G
Sbjct: 1474 NAGAQVQPKTKSKKPKPEKPRKSKKTEEIKYFGLVWKKSTNDKNNNENSG 1523
>05_04_0210 +
19082778-19082940,19083806-19083875,19084172-19084295,
19084442-19084897
Length = 270
Score = 27.5 bits (58), Expect = 6.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 409 ASGSGGWLKHDEG*PCISLCGSG*P 335
A GSGGW + +G + CG+G P
Sbjct: 28 AEGSGGWRRRRDGHVARARCGAGEP 52
>01_01_1190 +
9463973-9465732,9466210-9466440,9467664-9467793,
9468723-9468888,9469528-9469859,9470284-9470513,
9471535-9471613,9471689-9471865
Length = 1034
Score = 27.5 bits (58), Expect = 6.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 362 ARLPFVVLQPSSAPRGPLKQKRLRQPQPSR 451
A PF + +S+PR P + RQP P R
Sbjct: 10 ASAPFPTIPAASSPRNPRAARPRRQPAPFR 39
>05_02_0129 - 6897189-6897448,6897581-6898063,6898409-6898604
Length = 312
Score = 27.1 bits (57), Expect = 8.7
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -1
Query: 326 LFTLYSDLLAPALNGRRIKFLAGFW*PLLSCTLL*IPSCQGSPRHQQL 183
+F+ YS AP+ + ++ L G P +SCT+L + C G R QL
Sbjct: 98 IFSTYSGCNAPSAD-LKLASLLGLN-PSVSCTILSLHGCSGGGRALQL 143
>01_04_0020 + 15142402-15143421
Length = 339
Score = 27.1 bits (57), Expect = 8.7
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +1
Query: 247 GYQKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQ 405
G +PA +RRP A A +LY R H + +A A++ Q
Sbjct: 152 GEPRPASYQVRRPMSARAHGTLYFCYRFTDVKHPALEAIEAATATATSSATKQ 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,937,107
Number of Sequences: 37544
Number of extensions: 272715
Number of successful extensions: 657
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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