Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1099
(506 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022) 48 4e-06
SB_5153| Best HMM Match : zf-AD (HMM E-Value=2.2) 40 9e-04
SB_25068| Best HMM Match : PI-PLC-X (HMM E-Value=0) 29 2.2
SB_650| Best HMM Match : rve (HMM E-Value=0.00048) 28 3.8
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_54034| Best HMM Match : Tctex-1 (HMM E-Value=7.5) 27 8.9
SB_50440| Best HMM Match : SOUL (HMM E-Value=1.7) 27 8.9
SB_23458| Best HMM Match : MCPVI (HMM E-Value=1.4) 27 8.9
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_46683| Best HMM Match : F5_F8_type_C (HMM E-Value=9.6e-12) 27 8.9
SB_40686| Best HMM Match : rve (HMM E-Value=0.00016) 27 8.9
SB_28931| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_26625| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_11192| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_15577| Best HMM Match : Ribosomal_L28e (HMM E-Value=0.00022)
Length = 90
Score = 48.0 bits (109), Expect = 4e-06
Identities = 24/69 (34%), Positives = 40/69 (57%)
Frame = +1
Query: 205 P*QEGIHSSVQESKGYQKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRA 384
P +G+ + +++K KP K + + +RR+L ++ + N+YR DL +RRA
Sbjct: 8 PSGKGVVITTRKNKAANKPGKIMNKITISRDSRRTLKTIEGVCDKNYYRMDLKDPAMRRA 67
Query: 385 SAILRSQRP 411
AILRSQ+P
Sbjct: 68 CAILRSQKP 76
>SB_5153| Best HMM Match : zf-AD (HMM E-Value=2.2)
Length = 132
Score = 40.3 bits (90), Expect = 9e-04
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +1
Query: 31 RKNVVVTELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLLQVQRLDSQESCWCRGEP 207
R NV D +P+ C PCE + Y+ +Q+G EQ PP+L+ ++E C+C +P
Sbjct: 55 RVNVTEENEDVYPELLCRPCEGSLYR--LQKGKEQ---PPILRSWTPHTEEGCFCEAKP 108
>SB_25068| Best HMM Match : PI-PLC-X (HMM E-Value=0)
Length = 219
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 471 LSAY-KLFRLGCGCLSLFCFNGPLG 400
+ AY + R+GC CL L C++GP G
Sbjct: 86 VEAYVRCLRMGCRCLELDCWDGPDG 110
>SB_650| Best HMM Match : rve (HMM E-Value=0.00048)
Length = 363
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 1 VVFGVEIGLNRKNVVVTELDDH--PQQQCIPCEEAQYQKAVQ 120
V G+E N +N+ +T + P Q +PC +A Y+ VQ
Sbjct: 239 VTIGMEKFTNPRNIQLTSTTTYVPPNQVYVPCSQALYKPEVQ 280
>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2499
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = -3
Query: 270 VFSGLLVAFA-FLYTTVNPFLSGFS-TTPTAFL 178
+F G ++ F F+ T ++P+L+GFS PTA++
Sbjct: 125 LFDGFILFFLIFVVTFISPWLTGFSFVIPTAYI 157
>SB_59209| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1002
Score = 27.1 bits (57), Expect = 8.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 262 RAFGSLCFLVHYCESLPV 209
R FG CF H CE +PV
Sbjct: 682 RCFGVACFSKHLCEPVPV 699
>SB_54034| Best HMM Match : Tctex-1 (HMM E-Value=7.5)
Length = 255
Score = 27.1 bits (57), Expect = 8.9
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 62 IIRNNNAFLVKKRNIKKPFSKEPNNVT-NLHSFRYNGLIHKKAVGVVENPDRKGFT 226
++ + + FL K PF+ + +V LH +G ++ AV VE R+GFT
Sbjct: 9 LVSSPSDFLCKTIPFSTPFATDSVHVQITLHMDEQSGPTYEAAVNWVEQVCREGFT 64
>SB_50440| Best HMM Match : SOUL (HMM E-Value=1.7)
Length = 437
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 285 WTAD*VF--SGLLVAFAFLYTTVNPFLSGFSTTPTA 184
W+A V +GLLV+ LYT + F+ TPTA
Sbjct: 243 WSASSVIGVAGLLVSLIGLYTRRRELAAAFTRTPTA 278
>SB_23458| Best HMM Match : MCPVI (HMM E-Value=1.4)
Length = 770
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 285 WTAD*VF--SGLLVAFAFLYTTVNPFLSGFSTTPTA 184
W+A V +GLLV+ LYT + F+ TPTA
Sbjct: 287 WSASSVIGVAGLLVSLIGLYTRRRELAAAFARTPTA 322
>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 285 WTAD*VF--SGLLVAFAFLYTTVNPFLSGFSTTPTA 184
W+A V +GLLV+ LYT + F+ TPTA
Sbjct: 1280 WSASSVIGVAGLLVSLIGLYTRRRQLAAAFTCTPTA 1315
>SB_46683| Best HMM Match : F5_F8_type_C (HMM E-Value=9.6e-12)
Length = 495
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +1
Query: 151 LLQVQRLDSQESCWCRGEP*QEGIHSSVQESKGYQKPAKNLIRRPFKAGARRSLYKVK 324
+L+VQRL +QE C ++ I V++ +G +K + L + + + R L +++
Sbjct: 52 MLEVQRLSAQEKCHQGENLLKDRIQELVEDLEGERKTKQELSAQLIEERSLRELKQIE 109
>SB_40686| Best HMM Match : rve (HMM E-Value=0.00016)
Length = 1586
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 285 WTAD*VF--SGLLVAFAFLYTTVNPFLSGFSTTPTA 184
W+A V +GLLV+ LYT + F+ TPTA
Sbjct: 1107 WSASSVIGVAGLLVSLIGLYTRRRELAAAFTRTPTA 1142
>SB_28931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1035
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 285 WTAD*VF--SGLLVAFAFLYTTVNPFLSGFSTTPTA 184
W+A V +GLLV+ LYT + F+ TPTA
Sbjct: 450 WSASSVIGVAGLLVSLIGLYTRRRELATAFTRTPTA 485
>SB_26625| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 705
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -3
Query: 285 WTAD*VF--SGLLVAFAFLYTTVNPFLSGFSTTPTA 184
W+A V +GLLV+ LYT + F+ TPTA
Sbjct: 233 WSASSVIGVAGLLVSLIGLYTRRRELAAAFTRTPTA 268
>SB_11192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = -2
Query: 178 VNQAVVPEGVEVSHIVRLLAERL--FDIALLHKECIVVADDHPV 53
VN+ V ++ +++L RL D++L++K CI A DH V
Sbjct: 138 VNEVVKKSSKKLYFLIQLKRARLPPSDLSLIYKACIRSAVDHAV 181
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,928,425
Number of Sequences: 59808
Number of extensions: 304169
Number of successful extensions: 927
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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