Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1099
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical pr...    54   5e-08
AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical ...    29   1.9  
U53151-2|AAN73859.1|  385|Caenorhabditis elegans Serpentine rece...    28   4.5  
Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z81497-8|CAC70080.1|  707|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z75953-7|CAB00101.2|  707|Caenorhabditis elegans Hypothetical pr...    27   5.9  
U00181-1|AAA18259.1|  707|Caenorhabditis elegans protein kinase ...    27   5.9  
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr...    27   7.8  
Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AJ011523-1|CAB38019.1|  760|Caenorhabditis elegans CHE-2 protein...    27   7.8  
AF016447-1|AAG24019.1|  341|Caenorhabditis elegans Seven tm rece...    27   7.8  
AC006635-2|AAK68383.1|  760|Caenorhabditis elegans Abnormal chem...    27   7.8  

>Z75547-8|CAA99898.1|  126|Caenorhabditis elegans Hypothetical
           protein R11D1.8 protein.
          Length = 126

 Score = 54.4 bits (125), Expect = 5e-08
 Identities = 33/87 (37%), Positives = 47/87 (54%)
 Frame = +2

Query: 38  MSSSLNWMIIRNNNAFLVKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRK 217
           MS +L W +IRNN+AFL  +R I K FS E  N+  ++S +Y+GL +K A+ V  +   K
Sbjct: 1   MSDALVWQVIRNNSAFLRTQRGIGKRFSTEKFNLKKVNSPKYSGLANKHAIDV--SAAAK 58

Query: 218 GFTVVYKKAKATKSPLKT*SAVHSRQV 298
           G  V  K  K   +   T S +    V
Sbjct: 59  GVVVSTKNEKGRPAKAVTTSTLSKTPV 85


>AF039052-5|AAF98626.2|  586|Caenorhabditis elegans Hypothetical
           protein T22D1.4 protein.
          Length = 586

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -2

Query: 223 ESLPVRVLHDTNSFLVNQAVVPEGVEVSHIVRLLAERLFDIALLHK 86
           E+ PV+V ++ NS  V   +V   +EVSH   +  E    I L+HK
Sbjct: 192 ETKPVKVHYENNSPFVIATIVERFIEVSHWGNIAVEEY--IELVHK 235


>U53151-2|AAN73859.1|  385|Caenorhabditis elegans Serpentine
           receptor, class r protein10 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 135 LFGSLLNGFLILRFFTRNALLLRMIIQFS 49
           L  SL+NG  I  FF  N LL  +I+ F+
Sbjct: 255 LLWSLINGIYITSFFNSNPLLYSIILGFN 283


>Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical
           protein F46B3.1 protein.
          Length = 186

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 49  TELDDHPQQQCIPCEEAQYQKAVQQGAEQCD*PPLLQVQRLDS 177
           ++ +D  Q    PCE  QYQK   +    C  PP + V + D+
Sbjct: 59  SDTNDECQLDMSPCETDQYQKICPKTCNVC--PPAICVDQWDN 99


>Z81497-8|CAC70080.1|  707|Caenorhabditis elegans Hypothetical
           protein F57F5.5 protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 119 SKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVY 235
           SK P    ++H F +  ++ K + G V   +RKG   VY
Sbjct: 366 SKVPGGTLSIHDFTFMKVLGKGSFGKVMLAERKGTDEVY 404


>Z75953-7|CAB00101.2|  707|Caenorhabditis elegans Hypothetical
           protein F57F5.5 protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 119 SKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVY 235
           SK P    ++H F +  ++ K + G V   +RKG   VY
Sbjct: 366 SKVPGGTLSIHDFTFMKVLGKGSFGKVMLAERKGTDEVY 404


>U00181-1|AAA18259.1|  707|Caenorhabditis elegans protein kinase C
           protein.
          Length = 707

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 119 SKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVY 235
           SK P    ++H F +  ++ K + G V   +RKG   VY
Sbjct: 366 SKVPGGTLSIHDFTFMKVLGKGSFGKVMLAERKGTDEVY 404


>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
           protein F12F6.6 protein.
          Length = 1126

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 347 TAQTYARLPFVVLQPSSAPRGPLKQKRLRQPQPS 448
           T Q +A +P  V  PS+ P GPL Q   + P P+
Sbjct: 113 TPQQFAAVPQSVQAPSATPAGPL-QAMQQAPAPT 145


>Z22180-5|CAA80174.2|  717|Caenorhabditis elegans Hypothetical
           protein K11H3.4 protein.
          Length = 717

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -3

Query: 111 FLILRFFTRNALLLRMIIQFSDDDIFTV*TYFYT 10
           +L +RFF  N L+  M ++  DDDI    T FYT
Sbjct: 372 YLTIRFFFENFLIYPMEMEDIDDDI----TVFYT 401


>AJ011523-1|CAB38019.1|  760|Caenorhabditis elegans CHE-2 protein
           protein.
          Length = 760

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = -2

Query: 259 AFGSLCFLVHYCESLPVRVLHDTNSFLVNQAVVPE----GVEVSHIVRLLAERLFDIALL 92
           A G+   LV +   +  R+ ++    +  Q  V E      EVS       ER+  IA+L
Sbjct: 283 AVGTAAGLVFHAHIIDKRLTYEEFEIVQTQKTVIEVRDVSSEVSRETLETKERISKIAIL 342

Query: 91  HKECIVVADDH 59
           +K  IVV   H
Sbjct: 343 YKYLIVVTSSH 353


>AF016447-1|AAG24019.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 31 protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -3

Query: 270 VFSGLLVAFAFLYTTVNPFLSGFSTTPTAFL*IKPLYLKEWRLVTLFGSLLNGF--LILR 97
           VFS L + F+F+   V+PF   F+     F  +K  +L E  L+T      +G    I+ 
Sbjct: 49  VFSILCLIFSFIEMLVHPFFHSFNGGLINFNMVKWKWLSE-ELITFIVVSYSGLYATIVS 107

Query: 96  FFT 88
           FFT
Sbjct: 108 FFT 110


>AC006635-2|AAK68383.1|  760|Caenorhabditis elegans Abnormal
           chemotaxis protein 2 protein.
          Length = 760

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = -2

Query: 259 AFGSLCFLVHYCESLPVRVLHDTNSFLVNQAVVPE----GVEVSHIVRLLAERLFDIALL 92
           A G+   LV +   +  R+ ++    +  Q  V E      EVS       ER+  IA+L
Sbjct: 283 AVGTAAGLVFHAHIIDKRLTYEEFEIVQTQKTVIEVRDVSSEVSRETLETKERISKIAIL 342

Query: 91  HKECIVVADDH 59
           +K  IVV   H
Sbjct: 343 YKYLIVVTSSH 353


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,888,635
Number of Sequences: 27780
Number of extensions: 224749
Number of successful extensions: 604
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)