Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1099
         (506 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)            62   2e-10
At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unkn...    55   3e-08
At4g17230.1 68417.m02591 scarecrow-like transcription factor 13 ...    29   2.4  
At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protei...    27   5.5  

>At2g19730.1 68415.m02305 60S ribosomal protein L28 (RPL28A)
          Length = 143

 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
 Frame = +2

Query: 50  LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGV-VENPDRK 217
           L W I++NNN FLVK   + N K  FSKE NN+TN+HS++++GL +KK V +   + D+ 
Sbjct: 8   LIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQA 67

Query: 218 GFTVVYKKAKATKSPLKT*SAVHSRQVP 301
                 K  K  K  L    ++  ++ P
Sbjct: 68  VVLATTKTKKQNKPKLSVNKSILKKEFP 95



 Score = 29.1 bits (62), Expect = 1.8
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +1

Query: 238 ESKGYQKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQR 408
           ++K   KP  ++ +   K    R    V   +  N+YR DL KA L R SAI +  R
Sbjct: 74  KTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLR 130


>At4g29410.1 68417.m04200 60S ribosomal protein L28 (RPL28C) unknown
           protein chromosome II BAC F6F22 - Arabidopsis
           thaliana,PID:g3687251
          Length = 143

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
 Frame = +2

Query: 50  LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKG 220
           L W I++ NN FLVK   + N K  FSKE NN+ N++S++++GL +KK V +      +G
Sbjct: 8   LIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQG 67

Query: 221 FTVVYKKAKATKSP 262
             +   K K    P
Sbjct: 68  VVLGTTKTKRQNKP 81



 Score = 31.1 bits (67), Expect = 0.45
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = +1

Query: 214 EGIHSSVQESKGYQKPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAI 393
           +G+     ++K   KP  ++ +   K    R    V   +  N+YR DL KA L R SAI
Sbjct: 66  QGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAI 125

Query: 394 LRSQR 408
            +  R
Sbjct: 126 SKGLR 130


>At4g17230.1 68417.m02591 scarecrow-like transcription factor 13
           (SCL13)
          Length = 287

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +1

Query: 97  AQYQKAVQQGAEQCD*PPLLQVQRLDSQESCWCRG 201
           +QY   +Q+ A+    PPLL+V  +D  +S + RG
Sbjct: 91  SQYMFLIQELAKHPGGPPLLRVTGVDDSQSTYARG 125


>At1g48570.1 68414.m05431 zinc finger (Ran-binding) family protein
           contains Pfam domain, PF00641: Zn-finger in Ran binding
           protein and others
          Length = 455

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/64 (25%), Positives = 32/64 (50%)
 Frame = +1

Query: 73  QQCIPCEEAQYQKAVQQGAEQCD*PPLLQVQRLDSQESCWCRGEP*QEGIHSSVQESKGY 252
           +QC  C E +++   + G  +C     +  +R D+ + C C+  P Q    ++ QE   +
Sbjct: 394 KQCRECREQRHKTLAEPGDWECPSCDFVNFRRNDACKKCECK-RPSQA---NNDQEDHTW 449

Query: 253 QKPA 264
           ++PA
Sbjct: 450 KRPA 453


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,259,203
Number of Sequences: 28952
Number of extensions: 210438
Number of successful extensions: 504
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)