Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1098
(795 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI00015B4A1E Cluster: PREDICTED: similar to nuclear me... 54 5e-06
UniRef50_Q7QJC9 Cluster: ENSANGP00000009456; n=2; Culicidae|Rep:... 52 1e-05
UniRef50_UPI000065F5AC Cluster: Inner nuclear membrane protein M... 50 5e-05
UniRef50_Q5TZH9 Cluster: Novel protein similar to vertebrate int... 50 7e-05
UniRef50_Q8AXN1 Cluster: Smad1 antagonistic effector; n=3; Xenop... 49 2e-04
UniRef50_Q7JRE4 Cluster: RE60089p; n=3; Sophophora|Rep: RE60089p... 49 2e-04
UniRef50_Q9Y2U8 Cluster: Inner nuclear membrane protein Man1; n=... 48 2e-04
UniRef50_Q9WU40 Cluster: Inner nuclear membrane protein Man1; n=... 48 3e-04
UniRef50_A7S3H2 Cluster: Predicted protein; n=1; Nematostella ve... 46 0.001
UniRef50_A4V6M0 Cluster: Rnpc2 protein; n=1; Dugesia japonica|Re... 36 0.89
UniRef50_Q9ZVW9 Cluster: Putative splicing factor; n=3; Arabidop... 35 2.7
UniRef50_UPI0000E4A87D Cluster: PREDICTED: similar to RNA-bindin... 34 4.7
UniRef50_Q3UZ51 Cluster: Adult male thymus cDNA, RIKEN full-leng... 34 4.7
UniRef50_Q14498 Cluster: RNA-binding protein 39; n=55; Euteleost... 34 4.7
UniRef50_Q0LGK2 Cluster: Carbohydrate-binding, CenC-like precurs... 33 6.2
UniRef50_Q54U75 Cluster: CAMP receptor-like protein; n=2; Dictyo... 33 6.2
UniRef50_Q54T36 Cluster: Putative uncharacterized protein; n=9; ... 33 6.2
UniRef50_UPI00006CE532 Cluster: Bromodomain containing protein; ... 33 8.3
UniRef50_A0DTN8 Cluster: Chromosome undetermined scaffold_63, wh... 33 8.3
>UniRef50_UPI00015B4A1E Cluster: PREDICTED: similar to nuclear
membrane protein XMAN1; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to nuclear membrane protein XMAN1 -
Nasonia vitripennis
Length = 827
Score = 53.6 bits (123), Expect = 5e-06
Identities = 23/41 (56%), Positives = 29/41 (70%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNSPSIGPYLKMSRPQR 123
HG W++G L+TVKYLRLERY +RFP + + LK S QR
Sbjct: 772 HGCWFDGHLVTVKYLRLERYHERFPEAVNFTTPLKPSNNQR 812
>UniRef50_Q7QJC9 Cluster: ENSANGP00000009456; n=2; Culicidae|Rep:
ENSANGP00000009456 - Anopheles gambiae str. PEST
Length = 661
Score = 52.4 bits (120), Expect = 1e-05
Identities = 21/42 (50%), Positives = 30/42 (71%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNSPSIGPYLKMSRPQRS 126
+GWW++ RL+++K+LRLERY+QRFP S + LK S S
Sbjct: 618 NGWWFDNRLVSIKFLRLERYLQRFPRSLAGPACLKPSNKNNS 659
>UniRef50_UPI000065F5AC Cluster: Inner nuclear membrane protein Man1
(LEM domain-containing protein 3).; n=1; Takifugu
rubripes|Rep: Inner nuclear membrane protein Man1 (LEM
domain-containing protein 3). - Takifugu rubripes
Length = 801
Score = 50.4 bits (115), Expect = 5e-05
Identities = 20/37 (54%), Positives = 28/37 (75%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNSPSIGPYLKMS 111
HG W++G+L+TVKYLRL+RY QRFP + + L+ S
Sbjct: 764 HGSWFDGKLVTVKYLRLDRYHQRFPQAHACSTPLRAS 800
>UniRef50_Q5TZH9 Cluster: Novel protein similar to vertebrate
integral inner nuclear membrane protein; n=1; Danio
rerio|Rep: Novel protein similar to vertebrate integral
inner nuclear membrane protein - Danio rerio (Zebrafish)
(Brachydanio rerio)
Length = 841
Score = 50.0 bits (114), Expect = 7e-05
Identities = 21/37 (56%), Positives = 27/37 (72%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNSPSIGPYLKMS 111
HG W++G+L+TVKYLRL+RY QRFP + LK S
Sbjct: 781 HGSWFDGKLVTVKYLRLDRYHQRFPQALGSNTPLKPS 817
>UniRef50_Q8AXN1 Cluster: Smad1 antagonistic effector; n=3;
Xenopus|Rep: Smad1 antagonistic effector - Xenopus
laevis (African clawed frog)
Length = 784
Score = 48.8 bits (111), Expect = 2e-04
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNSPSIGPYLKMS 111
HG W++G+L+TVKYLRL+RY RFP + + LK S
Sbjct: 725 HGSWFDGKLVTVKYLRLDRYHHRFPQALTCSTPLKPS 761
>UniRef50_Q7JRE4 Cluster: RE60089p; n=3; Sophophora|Rep: RE60089p -
Drosophila melanogaster (Fruit fly)
Length = 650
Score = 48.8 bits (111), Expect = 2e-04
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNSPSIGP 96
+GWW++ RLI++K+LRLERY+ RFP PS P
Sbjct: 607 NGWWFDKRLISIKFLRLERYLSRFP-KPSAEP 637
>UniRef50_Q9Y2U8 Cluster: Inner nuclear membrane protein Man1; n=9;
Coelomata|Rep: Inner nuclear membrane protein Man1 -
Homo sapiens (Human)
Length = 911
Score = 48.4 bits (110), Expect = 2e-04
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNSPSIGPYLKMS 111
HG W++G+L+TVKYLRL+RY RFP + + LK S
Sbjct: 852 HGSWFDGKLVTVKYLRLDRYHHRFPQALTSNTPLKPS 888
>UniRef50_Q9WU40 Cluster: Inner nuclear membrane protein Man1; n=11;
Euteleostomi|Rep: Inner nuclear membrane protein Man1 -
Mus musculus (Mouse)
Length = 921
Score = 48.0 bits (109), Expect = 3e-04
Identities = 19/35 (54%), Positives = 26/35 (74%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNSPSIGPYLK 105
HG W++G+L+TVKYLRL+RY RFP + + LK
Sbjct: 862 HGSWFDGKLVTVKYLRLDRYHHRFPQALTCNTPLK 896
>UniRef50_A7S3H2 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 343
Score = 45.6 bits (103), Expect = 0.001
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFP 75
HG W++GRL+ VKYL L+RY QRFP
Sbjct: 280 HGCWFDGRLVAVKYLTLKRYHQRFP 304
>UniRef50_A4V6M0 Cluster: Rnpc2 protein; n=1; Dugesia japonica|Rep:
Rnpc2 protein - Dugesia japonica (Planarian)
Length = 278
Score = 36.3 bits (80), Expect = 0.89
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNSPSI 90
HG ++GRLIT Y+ LE Y + FP S S+
Sbjct: 241 HGRSFDGRLITANYIPLEHYHKMFPESVSV 270
>UniRef50_Q9ZVW9 Cluster: Putative splicing factor; n=3; Arabidopsis
thaliana|Rep: Putative splicing factor - Arabidopsis
thaliana (Mouse-ear cress)
Length = 561
Score = 34.7 bits (76), Expect = 2.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNS 81
HG W+ G++IT Y+ E Y +FP S
Sbjct: 532 HGRWFAGKMITATYMTTEAYEAKFPES 558
>UniRef50_UPI0000E4A87D Cluster: PREDICTED: similar to RNA-binding
region (RNP1, RRM) containing 2; n=4; Strongylocentrotus
purpuratus|Rep: PREDICTED: similar to RNA-binding region
(RNP1, RRM) containing 2 - Strongylocentrotus purpuratus
Length = 600
Score = 33.9 bits (74), Expect = 4.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNSPSIGPYLKMSRPQR 123
H W+ G++IT Y+ + Y FP + S L+ S P+R
Sbjct: 559 HNRWFAGKMITAAYMPVANYHAIFPQAASATMLLQPSTPRR 599
>UniRef50_Q3UZ51 Cluster: Adult male thymus cDNA, RIKEN full-length
enriched library, clone:5830435B10 product:RNA-binding
region (RNP1, RRM) containing 2, full insert sequence;
n=20; Eumetazoa|Rep: Adult male thymus cDNA, RIKEN
full-length enriched library, clone:5830435B10
product:RNA-binding region (RNP1, RRM) containing 2,
full insert sequence - Mus musculus (Mouse)
Length = 169
Score = 33.9 bits (74), Expect = 4.7
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNSPSIGPYLKMSR 114
HG W+ G++IT Y+ L Y FP+S + L SR
Sbjct: 131 HGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSR 168
>UniRef50_Q14498 Cluster: RNA-binding protein 39; n=55;
Euteleostomi|Rep: RNA-binding protein 39 - Homo sapiens
(Human)
Length = 530
Score = 33.9 bits (74), Expect = 4.7
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNSPSIGPYLKMSR 114
HG W+ G++IT Y+ L Y FP+S + L SR
Sbjct: 492 HGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSR 529
>UniRef50_Q0LGK2 Cluster: Carbohydrate-binding, CenC-like precursor;
n=1; Herpetosiphon aurantiacus ATCC 23779|Rep:
Carbohydrate-binding, CenC-like precursor -
Herpetosiphon aurantiacus ATCC 23779
Length = 693
Score = 33.5 bits (73), Expect = 6.2
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 34 VKYLRLERY-MQRFPNSPSIGPYLKMSRPQRSWDE 135
+ YL + Y PN+ ++G YL +SRPQ+ W E
Sbjct: 424 IDYLAIHPYSFVDVPNNDALGRYLMLSRPQKQWPE 458
>UniRef50_Q54U75 Cluster: CAMP receptor-like protein; n=2;
Dictyostelium discoideum|Rep: CAMP receptor-like protein
- Dictyostelium discoideum AX4
Length = 369
Score = 33.5 bits (73), Expect = 6.2
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = +1
Query: 286 LKGFYNIIIYFIKQT*FV---IIFFSKYIFKTRCKNS 387
L+GF N ++Y I + F+ + FF KYIF+ RC+ S
Sbjct: 294 LQGFLNCVVYGINEG-FINHYVEFFEKYIFRCRCRKS 329
>UniRef50_Q54T36 Cluster: Putative uncharacterized protein; n=9;
Dictyostelium discoideum|Rep: Putative uncharacterized
protein - Dictyostelium discoideum AX4
Length = 2778
Score = 33.5 bits (73), Expect = 6.2
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = -1
Query: 405 LLAFSNTIFTSSFKNILRKKYYNKSGLLYEINYYIIKTLQ----KSILFKAGNQVSINIV 238
L+ N + T+SFK ++ + Y+KS LY+ + I K+ FK N S NI
Sbjct: 478 LIINDNNLSTNSFKEFVKNQIYSKSKKLYQRSVLISSNWDQLKTKNKYFKTSNDKSSNIT 537
Query: 237 MTRINKII 214
+ R +I
Sbjct: 538 IKRNQPLI 545
>UniRef50_UPI00006CE532 Cluster: Bromodomain containing protein; n=1;
Tetrahymena thermophila SB210|Rep: Bromodomain containing
protein - Tetrahymena thermophila SB210
Length = 2113
Score = 33.1 bits (72), Expect = 8.3
Identities = 15/57 (26%), Positives = 32/57 (56%)
Frame = +1
Query: 25 LITVKYLRLERYMQRFPNSPSIGPYLKMSRPQRSWDE*SNMMNLFK*NFCHNGASLQ 195
LI L+ E+Y Q++PNS ++ +PQ+++++ +N N + +N ++ Q
Sbjct: 1917 LINNPLLQAEQYQQKYPNSQVAYNAIQQQKPQQNYNQINNNFNQQNQQYQYNNSAYQ 1973
>UniRef50_A0DTN8 Cluster: Chromosome undetermined scaffold_63, whole
genome shotgun sequence; n=7; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_63,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 1091
Score = 33.1 bits (72), Expect = 8.3
Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Frame = -2
Query: 446 FSNTI--LELG*FNLNFWHFQTLFLH----LVLKIYLEKNIITNQVCFM 318
F NT+ LEL LNF H TL + L+LK+ LE+N++ +Q C M
Sbjct: 265 FPNTVRELELKDCKLNFKHVDTLMSYINKNLILKLNLEQNLLRDQGCNM 313
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,961,382
Number of Sequences: 1657284
Number of extensions: 12098179
Number of successful extensions: 25311
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 24272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25302
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67908372675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -