Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1098
         (795 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom...    27   3.1  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    25   9.4  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    25   9.4  

>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -1

Query: 402 LAFSNTIFTSSFKNILRKKYYNKSGLL----YEINYYIIKT 292
           +AF+N I  S  +N L +KY +K  LL    + I  Y++ T
Sbjct: 193 VAFNNKIVISQIRNFLVQKYISKPLLLDHRKFHIRAYVLAT 233


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 494 YLPSNANIQDVSNLKIWSDMFGKID 568
           Y+  N+N  D+  L++W D+  K+D
Sbjct: 15  YVSHNSNDNDLEKLRVWKDI-SKVD 38


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 647 DIFTVHEQMFASFNFTLRPILLFY 576
           D  TVH+Q    F+F   P+  +Y
Sbjct: 24  DTITVHKQTIGKFSFKTMPLKAYY 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,969,269
Number of Sequences: 5004
Number of extensions: 57880
Number of successful extensions: 116
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)