BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1098 (795 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 10_08_0154 + 15266430-15266953,15267748-15267820,15267893-152679... 34 0.11 03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534,290... 31 1.1 09_04_0175 - 15353903-15354005,15354189-15354280,15354408-153545... 29 4.3 >10_08_0154 + 15266430-15266953,15267748-15267820,15267893-15267949, 15268248-15268303,15269584-15269797,15270497-15270538, 15270661-15270735,15270820-15270903,15271880-15271944, 15272436-15272655,15272820-15272908,15273326-15273440, 15273519-15273554 Length = 549 Score = 34.3 bits (75), Expect = 0.11 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = +1 Query: 1 HGWWYEGRLITVKYLRLERYMQRFPN 78 HG W+ G++IT ++ ++Y +FPN Sbjct: 524 HGRWFAGKMITATFMTAQQYKMKFPN 549 >03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534, 2906670-2906889,2907921-2907985,2908619-2908879, 2909204-2909417,2910643-2910698,2910891-2910947, 2911043-2911115,2912711-2913225 Length = 566 Score = 31.1 bits (67), Expect = 1.1 Identities = 9/26 (34%), Positives = 18/26 (69%) Frame = +1 Query: 1 HGWWYEGRLITVKYLRLERYMQRFPN 78 HG W+ G++IT ++ ++Y +FP+ Sbjct: 541 HGRWFAGKMITATFMSPQQYSTKFPS 566 >09_04_0175 - 15353903-15354005,15354189-15354280,15354408-15354553, 15354661-15354814,15354885-15354985,15355055-15355145, 15355146-15355378,15355501-15355736,15355839-15356066, 15356150-15356370,15356869-15356990,15357125-15357451, 15357616-15357754,15357822-15357901,15358478-15358678, 15359431-15359757,15360144-15360897 Length = 1184 Score = 29.1 bits (62), Expect = 4.3 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = -2 Query: 197 NCKLAPL*QKFYLNKFIILLYSSHER*GRDIFKYGPIDGEFGNL 66 N LAP+ KF+ + +L S+ +R G+D+ G ++ G L Sbjct: 750 NVSLAPMPMKFHQTSYDVLSISTGDRYGKDLIFNGTVEAINGAL 793 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,458,719 Number of Sequences: 37544 Number of extensions: 281820 Number of successful extensions: 440 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 433 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 440 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2150667972 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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