Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1098
         (795 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0154 + 15266430-15266953,15267748-15267820,15267893-152679...    34   0.11 
03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534,290...    31   1.1  
09_04_0175 - 15353903-15354005,15354189-15354280,15354408-153545...    29   4.3  

>10_08_0154 +
           15266430-15266953,15267748-15267820,15267893-15267949,
           15268248-15268303,15269584-15269797,15270497-15270538,
           15270661-15270735,15270820-15270903,15271880-15271944,
           15272436-15272655,15272820-15272908,15273326-15273440,
           15273519-15273554
          Length = 549

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 1   HGWWYEGRLITVKYLRLERYMQRFPN 78
           HG W+ G++IT  ++  ++Y  +FPN
Sbjct: 524 HGRWFAGKMITATFMTAQQYKMKFPN 549


>03_01_0373 -
           2904914-2904949,2905030-2905144,2906446-2906534,
           2906670-2906889,2907921-2907985,2908619-2908879,
           2909204-2909417,2910643-2910698,2910891-2910947,
           2911043-2911115,2912711-2913225
          Length = 566

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 1   HGWWYEGRLITVKYLRLERYMQRFPN 78
           HG W+ G++IT  ++  ++Y  +FP+
Sbjct: 541 HGRWFAGKMITATFMSPQQYSTKFPS 566


>09_04_0175 -
           15353903-15354005,15354189-15354280,15354408-15354553,
           15354661-15354814,15354885-15354985,15355055-15355145,
           15355146-15355378,15355501-15355736,15355839-15356066,
           15356150-15356370,15356869-15356990,15357125-15357451,
           15357616-15357754,15357822-15357901,15358478-15358678,
           15359431-15359757,15360144-15360897
          Length = 1184

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -2

Query: 197 NCKLAPL*QKFYLNKFIILLYSSHER*GRDIFKYGPIDGEFGNL 66
           N  LAP+  KF+   + +L  S+ +R G+D+   G ++   G L
Sbjct: 750 NVSLAPMPMKFHQTSYDVLSISTGDRYGKDLIFNGTVEAINGAL 793


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,458,719
Number of Sequences: 37544
Number of extensions: 281820
Number of successful extensions: 440
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)