Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1098
(795 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL137533-1|CAB70796.1| 198|Homo sapiens hypothetical protein pr... 48 3e-05
AF263918-1|AAF73293.1| 910|Homo sapiens inner nuclear membrane ... 48 3e-05
AF112299-1|AAD31593.2| 911|Homo sapiens integral inner nuclear ... 48 3e-05
L10911-1|AAA16347.1| 530|Homo sapiens splicing factor protein. 34 0.68
L10910-1|AAA16346.1| 524|Homo sapiens splicing factor protein. 34 0.68
BX537770-1|CAD97833.1| 373|Homo sapiens hypothetical protein pr... 34 0.68
BC141835-1|AAI41836.1| 530|Homo sapiens RNA binding motif prote... 34 0.68
BC131543-1|AAI31544.1| 508|Homo sapiens RBM39 protein protein. 34 0.68
AL357374-9|CAC11119.1| 524|Homo sapiens RNA binding motif prote... 34 0.68
AL357374-8|CAC11118.1| 530|Homo sapiens RNA binding motif prote... 34 0.68
>AL137533-1|CAB70796.1| 198|Homo sapiens hypothetical protein
protein.
Length = 198
Score = 48.4 bits (110), Expect = 3e-05
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNSPSIGPYLKMS 111
HG W++G+L+TVKYLRL+RY RFP + + LK S
Sbjct: 139 HGSWFDGKLVTVKYLRLDRYHHRFPQALTSNTPLKPS 175
>AF263918-1|AAF73293.1| 910|Homo sapiens inner nuclear membrane
protein protein.
Length = 910
Score = 48.4 bits (110), Expect = 3e-05
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNSPSIGPYLKMS 111
HG W++G+L+TVKYLRL+RY RFP + + LK S
Sbjct: 851 HGSWFDGKLVTVKYLRLDRYHHRFPQALTSNTPLKPS 887
>AF112299-1|AAD31593.2| 911|Homo sapiens integral inner nuclear
membrane protein MAN1 protein.
Length = 911
Score = 48.4 bits (110), Expect = 3e-05
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNSPSIGPYLKMS 111
HG W++G+L+TVKYLRL+RY RFP + + LK S
Sbjct: 852 HGSWFDGKLVTVKYLRLDRYHHRFPQALTSNTPLKPS 888
>L10911-1|AAA16347.1| 530|Homo sapiens splicing factor protein.
Length = 530
Score = 33.9 bits (74), Expect = 0.68
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNSPSIGPYLKMSR 114
HG W+ G++IT Y+ L Y FP+S + L SR
Sbjct: 492 HGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSR 529
>L10910-1|AAA16346.1| 524|Homo sapiens splicing factor protein.
Length = 524
Score = 33.9 bits (74), Expect = 0.68
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNSPSIGPYLKMSR 114
HG W+ G++IT Y+ L Y FP+S + L SR
Sbjct: 486 HGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSR 523
>BX537770-1|CAD97833.1| 373|Homo sapiens hypothetical protein
protein.
Length = 373
Score = 33.9 bits (74), Expect = 0.68
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNSPSIGPYLKMSR 114
HG W+ G++IT Y+ L Y FP+S + L SR
Sbjct: 335 HGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSR 372
>BC141835-1|AAI41836.1| 530|Homo sapiens RNA binding motif protein
39 protein.
Length = 530
Score = 33.9 bits (74), Expect = 0.68
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNSPSIGPYLKMSR 114
HG W+ G++IT Y+ L Y FP+S + L SR
Sbjct: 492 HGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSR 529
>BC131543-1|AAI31544.1| 508|Homo sapiens RBM39 protein protein.
Length = 508
Score = 33.9 bits (74), Expect = 0.68
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNSPSIGPYLKMSR 114
HG W+ G++IT Y+ L Y FP+S + L SR
Sbjct: 470 HGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSR 507
>AL357374-9|CAC11119.1| 524|Homo sapiens RNA binding motif protein
39 protein.
Length = 524
Score = 33.9 bits (74), Expect = 0.68
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNSPSIGPYLKMSR 114
HG W+ G++IT Y+ L Y FP+S + L SR
Sbjct: 486 HGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSR 523
>AL357374-8|CAC11118.1| 530|Homo sapiens RNA binding motif protein
39 protein.
Length = 530
Score = 33.9 bits (74), Expect = 0.68
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNSPSIGPYLKMSR 114
HG W+ G++IT Y+ L Y FP+S + L SR
Sbjct: 492 HGRWFAGKMITAAYVPLPTYHNLFPDSMTATQLLVPSR 529
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,577,586
Number of Sequences: 237096
Number of extensions: 1704699
Number of successful extensions: 6094
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6094
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9757565650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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