BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1098 (795 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 31 0.95 AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 31 0.95 Z83744-2|CAB06039.1| 430|Caenorhabditis elegans Hypothetical pr... 28 6.7 >AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical protein Y55F3AM.3c protein. Length = 435 Score = 31.1 bits (67), Expect = 0.95 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +1 Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNS 81 HG W+ G++IT Y+ + Y FP++ Sbjct: 345 HGRWFSGKVITANYVPVNSYHDLFPDA 371 >AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical protein Y55F3AM.3a protein. Length = 580 Score = 31.1 bits (67), Expect = 0.95 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +1 Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNS 81 HG W+ G++IT Y+ + Y FP++ Sbjct: 490 HGRWFSGKVITANYVPVNSYHDLFPDA 516 >Z83744-2|CAB06039.1| 430|Caenorhabditis elegans Hypothetical protein C06A12.5 protein. Length = 430 Score = 28.3 bits (60), Expect = 6.7 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -2 Query: 458 KSCIFSNTILELG*FNLNFWHFQTLFLHLVLK 363 K I + T+LEL LN WHF+ + + V+K Sbjct: 329 KELISNTTLLELSRPTLNSWHFEKVTIWPVIK 360 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,798,045 Number of Sequences: 27780 Number of extensions: 305943 Number of successful extensions: 603 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 591 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 603 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1935274832 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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