Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1098
         (795 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-10|AAM97977.1|  435|Caenorhabditis elegans Hypothetical...    31   0.95 
AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical ...    31   0.95 
Z83744-2|CAB06039.1|  430|Caenorhabditis elegans Hypothetical pr...    28   6.7  

>AC024826-10|AAM97977.1|  435|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.3c protein.
          Length = 435

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 1   HGWWYEGRLITVKYLRLERYMQRFPNS 81
           HG W+ G++IT  Y+ +  Y   FP++
Sbjct: 345 HGRWFSGKVITANYVPVNSYHDLFPDA 371


>AC024826-8|AAF60795.2|  580|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.3a protein.
          Length = 580

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 1   HGWWYEGRLITVKYLRLERYMQRFPNS 81
           HG W+ G++IT  Y+ +  Y   FP++
Sbjct: 490 HGRWFSGKVITANYVPVNSYHDLFPDA 516


>Z83744-2|CAB06039.1|  430|Caenorhabditis elegans Hypothetical
           protein C06A12.5 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 458 KSCIFSNTILELG*FNLNFWHFQTLFLHLVLK 363
           K  I + T+LEL    LN WHF+ + +  V+K
Sbjct: 329 KELISNTTLLELSRPTLNSWHFEKVTIWPVIK 360


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,798,045
Number of Sequences: 27780
Number of extensions: 305943
Number of successful extensions: 603
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)