BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1098 (795 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 35 0.072 At4g32140.1 68417.m04572 expressed protein 29 4.7 At2g33530.1 68415.m04110 serine carboxypeptidase S10 family prot... 28 6.2 At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila... 28 8.2 >At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing protein Length = 561 Score = 34.7 bits (76), Expect = 0.072 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +1 Query: 1 HGWWYEGRLITVKYLRLERYMQRFPNS 81 HG W+ G++IT Y+ E Y +FP S Sbjct: 532 HGRWFAGKMITATYMTTEAYEAKFPES 558 >At4g32140.1 68417.m04572 expressed protein Length = 394 Score = 28.7 bits (61), Expect = 4.7 Identities = 13/41 (31%), Positives = 25/41 (60%) Frame = -2 Query: 653 TRDIFTVHEQMFASFNFTLRPILLFYISDQFCQTYLTKFLD 531 T+DIFT ++Q FA + +++ Y+ F + +L ++LD Sbjct: 26 TQDIFTAYKQPFA-VTYLGASLMIVYLPVAFLKDWLCRYLD 65 >At2g33530.1 68415.m04110 serine carboxypeptidase S10 family protein similar to Serine carboxypeptidase II chains A and B (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat) Length = 465 Score = 28.3 bits (60), Expect = 6.2 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Frame = -3 Query: 310 LLYYKNPSKINFVQSRESSEYKYCYDQ--NK*NY*FFKS*IVNSPHYDKNSI*ISSSYYF 137 +LY + P + F + ESS Y+ D+ K N F + + P Y S+ I+ Y Sbjct: 122 MLYLETPVGVGFSYANESSSYEGVNDKITAKDNLVFLQKWFLKFPQYLNRSLFITGESYA 181 Query: 136 TH 131 H Sbjct: 182 GH 183 >At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar to CAF protein [Arabidopsis thaliana] GI:6102610; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain, PF03368: Domain of unknown function, PF00636: RNase3 domain, PF00035: Double-stranded RNA binding motif Length = 1676 Score = 27.9 bits (59), Expect = 8.2 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = -1 Query: 642 IYST*ANVCIIQFYAEAYIIVLYFRSILPNISDQIFRFE 526 +YS +NV + F + + V Y+RS L + S R+E Sbjct: 328 VYSVESNVQLDGFVSSPLVKVYYYRSALSDASQSTIRYE 366 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,435,856 Number of Sequences: 28952 Number of extensions: 264442 Number of successful extensions: 446 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 441 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 446 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1794809600 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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