Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1098
         (795 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ...    35   0.072
At4g32140.1 68417.m04572 expressed protein                             29   4.7  
At2g33530.1 68415.m04110 serine carboxypeptidase S10 family prot...    28   6.2  
At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative simila...    28   8.2  

>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
           protein
          Length = 561

 Score = 34.7 bits (76), Expect = 0.072
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 1   HGWWYEGRLITVKYLRLERYMQRFPNS 81
           HG W+ G++IT  Y+  E Y  +FP S
Sbjct: 532 HGRWFAGKMITATYMTTEAYEAKFPES 558


>At4g32140.1 68417.m04572 expressed protein
          Length = 394

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -2

Query: 653 TRDIFTVHEQMFASFNFTLRPILLFYISDQFCQTYLTKFLD 531
           T+DIFT ++Q FA   +    +++ Y+   F + +L ++LD
Sbjct: 26  TQDIFTAYKQPFA-VTYLGASLMIVYLPVAFLKDWLCRYLD 65


>At2g33530.1 68415.m04110 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase II chains A and B
           (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)
          Length = 465

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = -3

Query: 310 LLYYKNPSKINFVQSRESSEYKYCYDQ--NK*NY*FFKS*IVNSPHYDKNSI*ISSSYYF 137
           +LY + P  + F  + ESS Y+   D+   K N  F +   +  P Y   S+ I+   Y 
Sbjct: 122 MLYLETPVGVGFSYANESSSYEGVNDKITAKDNLVFLQKWFLKFPQYLNRSLFITGESYA 181

Query: 136 TH 131
            H
Sbjct: 182 GH 183


>At5g20320.1 68418.m02418 DEAD/DEAH box helicase, putative similar
           to CAF protein [Arabidopsis thaliana] GI:6102610;
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF03368:
           Domain of unknown function, PF00636: RNase3 domain,
           PF00035: Double-stranded RNA binding motif
          Length = 1676

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 642 IYST*ANVCIIQFYAEAYIIVLYFRSILPNISDQIFRFE 526
           +YS  +NV +  F +   + V Y+RS L + S    R+E
Sbjct: 328 VYSVESNVQLDGFVSSPLVKVYYYRSALSDASQSTIRYE 366


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,435,856
Number of Sequences: 28952
Number of extensions: 264442
Number of successful extensions: 446
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)