BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1097 (762 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC19C7.04c |||conserved fungal protein|Schizosaccharomyces pom... 27 2.2 SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 26 5.1 SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar... 26 6.7 SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo... 26 6.7 SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 8.9 >SPBC19C7.04c |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 124 Score = 27.5 bits (58), Expect = 2.2 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = -2 Query: 707 T*NKIQTESVLHRQYFGTN*NAPLQNHPTYFRH 609 T ++ T S+L + Y+G + P +N+PT +R+ Sbjct: 24 TNKEVPTTSLLSKDYYGHSIEEPDENNPTRWRY 56 >SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosaccharomyces pombe|chr 1|||Manual Length = 378 Score = 26.2 bits (55), Expect = 5.1 Identities = 9/17 (52%), Positives = 14/17 (82%) Frame = -1 Query: 621 LFSASWVPSLWSLISLR 571 L+S+SW+P+L L+S R Sbjct: 285 LYSSSWIPTLHDLVSTR 301 >SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 309 Score = 25.8 bits (54), Expect = 6.7 Identities = 9/20 (45%), Positives = 16/20 (80%) Frame = +1 Query: 190 ACPVLSEDYFRPWRQLAAAS 249 +CP+ +EDY++ + Q+ AAS Sbjct: 242 SCPLCNEDYYKYFLQMDAAS 261 >SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizosaccharomyces pombe|chr 2|||Manual Length = 752 Score = 25.8 bits (54), Expect = 6.7 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +2 Query: 56 YNQICLFYHSCWVTGPAFVTTTGPVVLLIKILD 154 Y I YHS WVT A+ + P V+L +L+ Sbjct: 491 YFLIMFVYHSSWVTSNAY---SSPTVVLSTVLN 520 >SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family |Schizosaccharomyces pombe|chr 1|||Manual Length = 1420 Score = 25.4 bits (53), Expect = 8.9 Identities = 11/50 (22%), Positives = 21/50 (42%) Frame = +1 Query: 442 KARRLRLWNRDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGP 591 + R + + H G S S + + ++ + HR R + D+GP Sbjct: 710 RTERKKDTQKQSHDHGHSHSKSHDREKEKEKKKDREHRKHRETEEEDEGP 759 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,124,635 Number of Sequences: 5004 Number of extensions: 63847 Number of successful extensions: 162 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 157 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 162 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 365309308 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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