Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1097
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.04c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.2  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    26   5.1  
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    26   6.7  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    26   6.7  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   8.9  

>SPBC19C7.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 124

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -2

Query: 707 T*NKIQTESVLHRQYFGTN*NAPLQNHPTYFRH 609
           T  ++ T S+L + Y+G +   P +N+PT +R+
Sbjct: 24  TNKEVPTTSLLSKDYYGHSIEEPDENNPTRWRY 56


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 621 LFSASWVPSLWSLISLR 571
           L+S+SW+P+L  L+S R
Sbjct: 285 LYSSSWIPTLHDLVSTR 301


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 190 ACPVLSEDYFRPWRQLAAAS 249
           +CP+ +EDY++ + Q+ AAS
Sbjct: 242 SCPLCNEDYYKYFLQMDAAS 261


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 56  YNQICLFYHSCWVTGPAFVTTTGPVVLLIKILD 154
           Y  I   YHS WVT  A+   + P V+L  +L+
Sbjct: 491 YFLIMFVYHSSWVTSNAY---SSPTVVLSTVLN 520


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/50 (22%), Positives = 21/50 (42%)
 Frame = +1

Query: 442 KARRLRLWNRDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGP 591
           +  R +   +  H  G S S   +  + ++ +    HR  R   + D+GP
Sbjct: 710 RTERKKDTQKQSHDHGHSHSKSHDREKEKEKKKDREHRKHRETEEEDEGP 759


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,124,635
Number of Sequences: 5004
Number of extensions: 63847
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)