Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1097
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 37 0.020
03_02_0484 + 8805053-8805538 37 0.020
03_02_0483 - 8804021-8804485 37 0.020
03_02_0478 + 8775892-8776377 36 0.035
12_01_0061 + 514798-515967 35 0.061
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 35 0.081
01_01_0229 - 1943473-1943922 34 0.11
01_01_0231 + 1951047-1951499 34 0.14
02_05_0494 + 29486960-29487454 33 0.25
01_01_0227 + 1933247-1933699 31 0.76
02_05_0444 - 29073740-29073844,29074417-29074725,29077910-290779... 31 1.3
03_05_0865 - 28365430-28367640 30 1.7
06_03_1121 + 27767707-27768065,27768612-27769034,27770013-277701... 30 2.3
08_02_0667 - 19834793-19834911,19836216-19836345 29 3.1
08_02_0396 - 16654603-16655030,16655803-16655906,16655988-166565... 29 3.1
07_03_0725 + 20991640-20992471,20993308-20993418,20993542-209937... 29 5.3
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 29 5.3
04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471 28 7.1
01_05_0523 - 22915390-22915901,22916496-22916619,22916708-229168... 28 7.1
01_04_0109 + 16112581-16112934 28 7.1
11_06_0490 - 24293218-24293373,24293454-24293521,24293845-242939... 28 9.3
11_06_0022 + 19321886-19321918,19323059-19323131,19323587-193236... 28 9.3
06_03_1454 - 30261240-30261470,30261896-30262615,30262700-302628... 28 9.3
05_03_0619 + 16274255-16274396,16274775-16274848,16275111-162761... 28 9.3
05_03_0104 - 8426374-8426542,8426656-8426828,8427020-8427103,842... 28 9.3
>03_02_0485 - 8808139-8808618
Length = 159
Score = 36.7 bits (81), Expect = 0.020
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPGRYP 521
S +F+RR+ LPE PE +++ + +GVLT+T P P
Sbjct: 111 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 147
>03_02_0484 + 8805053-8805538
Length = 161
Score = 36.7 bits (81), Expect = 0.020
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPGRYP 521
S +F+RR+ LPE PE +++ + +GVLT+T P P
Sbjct: 113 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 149
>03_02_0483 - 8804021-8804485
Length = 154
Score = 36.7 bits (81), Expect = 0.020
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +3
Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAPGRYP 521
S +F+RR+ LPE PE +++ + +GVLT+T P P
Sbjct: 106 SGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPKEEP 142
>03_02_0478 + 8775892-8776377
Length = 161
Score = 35.9 bits (79), Expect = 0.035
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +3
Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAP 509
S +F+RR+ LP+ A PE +++ + +GVLT+T P
Sbjct: 113 SGKFLRRFRLPDNAKPEQIKASM-ENGVLTVTVP 145
>12_01_0061 + 514798-515967
Length = 389
Score = 35.1 bits (77), Expect = 0.061
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -1
Query: 609 SWVPSLWSLISLRTGPVCAMGTFRSPLTASGTFL 508
SW PS +LISL +G CA FRS + A+ FL
Sbjct: 295 SWSPSKLNLISLGSGRFCAAKIFRSNMPAAAAFL 328
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 34.7 bits (76), Expect = 0.081
Identities = 17/34 (50%), Positives = 24/34 (70%)
Frame = +3
Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAP 509
S QF+RR+ LPE A + V++ L +GVLT+T P
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGL-ENGVLTVTVP 134
>01_01_0229 - 1943473-1943922
Length = 149
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAP 509
S QF+RR+ LPE A + V++ + +GVLT+T P
Sbjct: 101 SGQFMRRFRLPENAKVDQVKASM-ENGVLTVTVP 133
>01_01_0231 + 1951047-1951499
Length = 150
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +3
Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAP 509
S QF+RR+ LPE A + V++ + +GVLT+T P
Sbjct: 102 SGQFMRRFRLPENAKVDQVKAGM-ENGVLTVTVP 134
>02_05_0494 + 29486960-29487454
Length = 164
Score = 33.1 bits (72), Expect = 0.25
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 411 RQFVRRYALPEGAAPETVESRLSSDGVLTITAPGR 515
R V ++ LPE AA + +R++ DGVLT+T P R
Sbjct: 106 RAAVTQFRLPEDAAADEASARMA-DGVLTVTVPKR 139
>01_01_0227 + 1933247-1933699
Length = 150
Score = 31.5 bits (68), Expect = 0.76
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAP 509
S +F RR+ LP GA + V + + +GVLT+T P
Sbjct: 102 SGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVP 134
>02_05_0444 -
29073740-29073844,29074417-29074725,29077910-29077981,
29078541-29078633,29078825-29078982,29079247-29079415,
29080204-29081241,29081632-29081759,29081926-29081985,
29082033-29083077
Length = 1058
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 502 PRQEGTRRRQGRAKGAHRTDRSRSQGDQGPERGNPGC 612
PR G GR R R + QG++G ERG GC
Sbjct: 66 PRPAG---ENGRTTTTRRRRRRKQQGEEGEERGERGC 99
>03_05_0865 - 28365430-28367640
Length = 736
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 505 RQEGTRRRQGRAKGAHRTDRSRSQGDQGPERGN 603
R + +RR + R +G DR R +GD+ ERG+
Sbjct: 112 RGDSSRRDRDRERGDRDRDRDRERGDRDRERGD 144
>06_03_1121 +
27767707-27768065,27768612-27769034,27770013-27770175,
27770271-27770381,27770895-27770963,27771117-27771203,
27771967-27772752
Length = 665
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +1
Query: 496 PSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPERGN 603
P P GT+R Q R G R DR + DQG RG+
Sbjct: 589 PPPNNRGTKREQ-RRPGGERGDRYETTSDQG-SRGH 622
>08_02_0667 - 19834793-19834911,19836216-19836345
Length = 82
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 432 ALPEGAAPETVESRLSSDGVLTITAPGRYPTPSRESE-RCPSHRPVP 569
A+ GAA + + + S DG I + GR P PS +S C +H P
Sbjct: 15 AIASGAATDWIGASSSMDGFGRIRSDGRGPIPSGKSTMACTAHLGCP 61
>08_02_0396 -
16654603-16655030,16655803-16655906,16655988-16656579,
16656820-16656993,16657105-16657309
Length = 500
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +1
Query: 496 PSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPERGNP 606
P Q+G R GR G+H T R+ G RG+P
Sbjct: 12 PRQGQQGHGRGHGRVSGSHSTIEPRNVAAAGRGRGSP 48
>07_03_0725 +
20991640-20992471,20993308-20993418,20993542-20993739,
20993860-20993891,20993943-20994153,20994806-20995043,
20995507-20995657,20996171-20996533
Length = 711
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +1
Query: 139 DQDFGLALTPNDMLAAVACPVLSEDYFRPWRQLAAASRDS 258
D+ FGLAL DM A AC F+ R L RD+
Sbjct: 75 DRVFGLALCRGDMRDAAACAGCVSGAFQRLRALCGRDRDA 114
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 493 SPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPER 597
SPSPR + RR Q +GA T+ R + ER
Sbjct: 325 SPSPRSKRLRRAQSEREGADATEGDRRKTTSREER 359
>04_01_0203 + 2432745-2433642,2433723-2433806,2434458-2434471
Length = 331
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 487 GFSPSPRQEGTRRRQGRAKGAHRTDRSRSQG 579
G SP P+ +GT G+ G R+D S G
Sbjct: 33 GTSPLPKDKGTATEPGKTVGTKRSDAPSSPG 63
>01_05_0523 -
22915390-22915901,22916496-22916619,22916708-22916844,
22917383-22917518,22917614-22917951,22919426-22919663
Length = 494
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 508 QEGTRRRQGRAKGAHRTDRSRSQGDQGPERG 600
+EG RRR+G+ KGA + + D P G
Sbjct: 10 EEGRRRRKGKGKGAGEMVLQQEEEDAAPAMG 40
>01_04_0109 + 16112581-16112934
Length = 117
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 478 HQTGFSPSPRQEGTRRRQGRAKGAHRTDRSR 570
HQ+ P G+RRRQGR A R +R
Sbjct: 35 HQSDARTKPTTAGSRRRQGRGSSAARKAAAR 65
>11_06_0490 -
24293218-24293373,24293454-24293521,24293845-24293986,
24294079-24294699,24294791-24294871,24295002-24295072,
24296106-24296176,24296568-24296675,24296786-24297024,
24297493-24297657
Length = 573
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 445 ARRLRLWNRDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPERGNP 606
+ R R +RD H+ S S R R+ R++ R+ + S DQGP+ P
Sbjct: 133 SERRRDRDRDGHRRHRSRSRSPSKGRDRRSRSRSRSRSSKRVSGFDQGPQAAIP 186
>11_06_0022 +
19321886-19321918,19323059-19323131,19323587-19323680,
19324383-19324499,19324584-19324641,19324713-19325114
Length = 258
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +3
Query: 423 RRYALPEGAAPETVESRLSSDGV--LTITAPGRYPTPSRESERCPSHR 560
RR ALP G+ PE ESR S V I+ GR R R P+ R
Sbjct: 105 RRKALPNGSDPENEESRSSKMAVRSANISPRGRGRGRGRGRGRPPTKR 152
>06_03_1454 -
30261240-30261470,30261896-30262615,30262700-30262843,
30262953-30263204,30263542-30263751
Length = 518
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 475 CHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPERG 600
CH+ P P E +RR R K + R + +G+ P G
Sbjct: 2 CHRLPPPPWPTCEEGKRRGRRKKASRRRRKKEEEGEAMPREG 43
>05_03_0619 +
16274255-16274396,16274775-16274848,16275111-16276139,
16276484-16276702,16277228-16277250,16277482-16277606,
16279480-16279670,16280202-16280360,16281359-16281598
Length = 733
Score = 27.9 bits (59), Expect = 9.3
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = -1
Query: 465 PQSQAPRLQAARNVGRTA-LKYTRARLSSLRACLPP--RCTHRQSSPKSLPARSAARPD* 295
P+ Q P + R ++ RA + + C+ P R L A +A+
Sbjct: 598 PRKQMPEFETTRYFNLAGFVEQLRALAAEVGYCITPEYRVVRNFEDKGVLEALWSAKSSP 657
Query: 294 LGTCPCRPL 268
GTCP RPL
Sbjct: 658 YGTCPSRPL 666
>05_03_0104 -
8426374-8426542,8426656-8426828,8427020-8427103,
8427110-8427205,8427530-8427616,8428639-8428767,
8428922-8429098,8429185-8429295,8429642-8429761,
8430767-8432427,8432485-8432867,8433707-8434470,
8434532-8434813,8436158-8436493
Length = 1523
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +1
Query: 520 RRRQGRAKGAHRTDRSRSQGDQGPERG 600
RR G+A R R+QGD G ERG
Sbjct: 10 RRSAGKAAPGAGRQRRRAQGDNGVERG 36
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,511,800
Number of Sequences: 37544
Number of extensions: 493734
Number of successful extensions: 1807
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1806
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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