BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1097 (762 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 57 1e-08 SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 55 7e-08 SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 54 2e-07 SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 52 7e-07 SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 52 7e-07 SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 50 2e-06 SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06 SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 47 2e-05 SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 36 0.036 SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) 34 0.11 SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08) 32 0.44 SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4 SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4 SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1 SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1 SB_38057| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1 SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5 SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5 SB_59279| Best HMM Match : SURF6 (HMM E-Value=3.5) 29 5.5 SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18) 29 5.5 SB_5270| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5 SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 28 7.2 SB_16509| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2 SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 7.2 SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16) 28 9.5 SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9) 28 9.5 SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5 >SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) Length = 185 Score = 57.2 bits (132), Expect = 1e-08 Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 1/90 (1%) Frame = +3 Query: 276 DKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 452 D DKFQ+ LDV+ F PEEI+ K +G I V + S++F R Y LPEG Sbjct: 2 DADKFQIATLDVREFKPEEITCKVENGKIKVSGLQRHESEEG-FDSKEFRRCYNLPEGVD 60 Query: 453 PETVESRLSSDGVLTITAPGRYPTPSRESE 542 ++ +R++ DG+L + A + P + E++ Sbjct: 61 ESSISTRIAEDGMLHVEALKKSPPATTENK 90 Score = 48.4 bits (110), Expect = 6e-06 Identities = 29/80 (36%), Positives = 38/80 (47%) Frame = +3 Query: 276 DKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAP 455 D KF + LDV F PEE+ VK G+ + + +RQF R + LP Sbjct: 96 DDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFNRHFVLPREVDM 154 Query: 456 ETVESRLSSDGVLTITAPGR 515 +T+ RL DGVL I A R Sbjct: 155 DTLVPRLGKDGVLYIEADKR 174 >SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) Length = 189 Score = 54.8 bits (126), Expect = 7e-08 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 1/92 (1%) Frame = +3 Query: 273 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449 A K+ ++ LDV+ + PEEIS K +G + V + ++F R + LPEG Sbjct: 2 AKKNTLEIAKLDVKEYRPEEISFKVENGVVKVQGRHVNEGEFGFEL-KEFRRTFTLPEGI 60 Query: 450 APETVESRLSSDGVLTITAPGRYPTPSRESER 545 PE V SR+S+ G L I A P P E E+ Sbjct: 61 DPENVTSRISNHGHLHIEARKALPKPEAELEK 92 Score = 38.7 bits (86), Expect = 0.005 Identities = 23/79 (29%), Positives = 37/79 (46%) Frame = +3 Query: 270 KADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449 KA +DKF + +DV F PE I V+ ++V Y + F R++ LP Sbjct: 92 KAKEDKFSMAIDVAGFPPESIKVQVLGNELLV-NANHEVEHEGHYHAMHFNRQFVLPREV 150 Query: 450 APETVESRLSSDGVLTITA 506 +++ +RL +G L A Sbjct: 151 DMDSLTTRLDKEGKLHFEA 169 >SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) Length = 210 Score = 53.6 bits (123), Expect = 2e-07 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 1/92 (1%) Frame = +3 Query: 234 TRGCIS*LGSSIKADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYIS 410 TR C L ++ + + DK ++ LDV+++ PEEIS+K G I + Y + Sbjct: 24 TRNCS--LAANTEMEGDKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKSEGEHG-YET 80 Query: 411 RQFVRRYALPEGAAPETVESRLSSDGVLTITA 506 +F R Y LP+G TV SR++ DG+L I A Sbjct: 81 SEFHRSYNLPDGVDVSTVSSRITGDGLLHIEA 112 Score = 25.8 bits (54), Expect(2) = 0.29 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +3 Query: 258 GSSIKADKDKFQVNLDVQHFSPE 326 G K D +F V LDV FSP+ Sbjct: 133 GDIAKIDDKRFTVTLDVSSFSPD 155 Score = 25.8 bits (54), Expect(2) = 0.29 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = +3 Query: 423 RRYALPEGAAPETVESRLSSDGVLTITAPG-RYPTP 527 R + LP+ +++ SRL DG L I A +PTP Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKRILHPTP 196 >SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) Length = 190 Score = 51.6 bits (118), Expect = 7e-07 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Frame = +3 Query: 273 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449 A+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGV 60 Query: 450 APETVESRLSSDGVLTITAPGRYPTPSRESE 542 V++R+S+ G L I A P P E Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEE 91 Score = 34.7 bits (76), Expect = 0.083 Identities = 21/78 (26%), Positives = 35/78 (44%) Frame = +3 Query: 282 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 461 DKF + +DV F P+ I V+ ++V Y + F R++ LP ++ Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 155 Query: 462 VESRLSSDGVLTITAPGR 515 + +RL +G L A R Sbjct: 156 LTTRLDKEGKLHFEAKKR 173 >SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) Length = 190 Score = 51.6 bits (118), Expect = 7e-07 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%) Frame = +3 Query: 273 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449 A+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGV 60 Query: 450 APETVESRLSSDGVLTITAPGRYPTPSRESE 542 V++R+S+ G L I A P P E Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEE 91 Score = 34.7 bits (76), Expect = 0.083 Identities = 21/78 (26%), Positives = 35/78 (44%) Frame = +3 Query: 282 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 461 DKF + +DV F P+ I V+ ++V Y + F R++ LP ++ Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 155 Query: 462 VESRLSSDGVLTITAPGR 515 + +RL +G L A R Sbjct: 156 LTTRLDKEGKLHFEAKKR 173 >SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) Length = 424 Score = 50.0 bits (114), Expect = 2e-06 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Frame = +3 Query: 273 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449 A+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGV 60 Query: 450 APETVESRLSSDGVLTITAPGRYPTPSRESE 542 V++R+S+ G L I A P P E Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEE 91 Score = 48.0 bits (109), Expect = 8e-06 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%) Frame = +3 Query: 282 DKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPE 458 D+ ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVEAS 297 Query: 459 TVESRLSSDGVLTITAPGRYPTPSRESE 542 V++R+S+ G L I A P P E Sbjct: 298 NVKTRISNHGQLHIEAMKALPGPDGGEE 325 Score = 34.7 bits (76), Expect = 0.083 Identities = 21/78 (26%), Positives = 35/78 (44%) Frame = +3 Query: 282 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 461 DKF + +DV F P+ I V+ ++V Y + F R++ LP ++ Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 155 Query: 462 VESRLSSDGVLTITAPGR 515 + +RL +G L A R Sbjct: 156 LTTRLDKEGKLHFEAKKR 173 Score = 34.7 bits (76), Expect = 0.083 Identities = 21/78 (26%), Positives = 35/78 (44%) Frame = +3 Query: 282 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 461 DKF + +DV F P+ I V+ ++V Y + F R++ LP ++ Sbjct: 331 DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 389 Query: 462 VESRLSSDGVLTITAPGR 515 + +RL +G L A R Sbjct: 390 LTTRLDKEGKLHFEAKKR 407 >SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 760 Score = 50.0 bits (114), Expect = 2e-06 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Frame = +3 Query: 273 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449 A+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGV 60 Query: 450 APETVESRLSSDGVLTITAPGRYPTPSRESE 542 V++R+S+ G L I A P P E Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEE 91 Score = 34.7 bits (76), Expect = 0.083 Identities = 21/78 (26%), Positives = 35/78 (44%) Frame = +3 Query: 282 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 461 DKF + +DV F P+ I V+ ++V Y + F R++ LP ++ Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 155 Query: 462 VESRLSSDGVLTITAPGR 515 + +RL +G L A R Sbjct: 156 LTTRLDKEGKLHFEAKKR 173 >SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) Length = 695 Score = 46.8 bits (106), Expect = 2e-05 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Frame = +3 Query: 276 DKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 452 +++K ++ LDV+ + PEEIS K +G + V + ++F R + LPEG Sbjct: 4 NENKLEIAKLDVREYRPEEISFKVENGVVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVE 62 Query: 453 PETVESRLSSDGVLTITAPGRYPTP 527 V++R+S+ G L I A P P Sbjct: 63 ASNVKTRISNHGQLHIEAMKALPEP 87 Score = 37.5 bits (83), Expect = 0.012 Identities = 23/86 (26%), Positives = 40/86 (46%) Frame = +3 Query: 258 GSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYAL 437 G+ ++ DKF + +DV+ F PE I V+ ++V Y + F R++ L Sbjct: 89 GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFIL 147 Query: 438 PEGAAPETVESRLSSDGVLTITAPGR 515 P +++ +RL +G L A R Sbjct: 148 PREVDMDSLTTRLDKEGKLHFEAKKR 173 >SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) Length = 259 Score = 35.9 bits (79), Expect = 0.036 Identities = 20/61 (32%), Positives = 29/61 (47%) Frame = +3 Query: 261 SSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALP 440 S+ D KF + LDV F PEE+ VK G+ + + +RQF R + LP Sbjct: 19 SAATKDDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFNRHFVLP 77 Query: 441 E 443 + Sbjct: 78 Q 78 >SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) Length = 761 Score = 34.3 bits (75), Expect = 0.11 Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 6/130 (4%) Frame = +1 Query: 244 ASRDSVPA*RPTRTS-SKSIWTCSTSR-----RKRFR*RLPMGTSWWKASTKRRKTSTGI 405 + + S+ RPTRT S+ + S SR R R R R P + W + R ++ T Sbjct: 385 SEKQSIENGRPTRTQPGGSLNSSSRSRTKSRSRSRIRSRSPARSRSWSHTRSRSRSHT-- 442 Query: 406 FQGSSSDVTRCLKARRLRLWNRDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQ 585 + S TR R+R +R Q S + R + + R+ RA +HR RSRS+ Sbjct: 443 -RSRSRSHTRSRSRSRIR--SRSRSQELDSRTLRSKKSFERRSRA--SHRESRSRSKSRT 497 Query: 586 GPERGNPGCR 615 ER R Sbjct: 498 KRERSRKKSR 507 >SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08) Length = 865 Score = 32.3 bits (70), Expect = 0.44 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Frame = +1 Query: 439 LKARRLRLWNRDCHQTGFSPSPRQEGTRRRQGRAKGAH---RTDRSRSQGD 582 L+ +R L NR G SPSPR RR R KG+ +T +S S+ D Sbjct: 441 LRRQRSPLRNRSPRWRGRSPSPRSRRRRRSSDRYKGSFSEGQTGKSESESD 491 >SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 652 Score = 29.9 bits (64), Expect = 2.4 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = -1 Query: 249 RCSRELSPWSEVVFGEHWTGDGSQHVVR 166 R SR SP + FG TGDG QH+V+ Sbjct: 100 RASRTPSPSDSIDFGAVETGDGLQHLVK 127 >SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1272 Score = 29.9 bits (64), Expect = 2.4 Identities = 27/83 (32%), Positives = 38/83 (45%) Frame = +1 Query: 358 SWWKASTKRRKTSTGIFQGSSSDVTRCLKARRLRLWNRDCHQTGFSPSPRQEGTRRRQGR 537 S+ K+ K RK S Q SS +R R R + D + +SP PR+ R + R Sbjct: 605 SYRKSRDKGRKRS----QSRSSSRSRSSSYSRSRSRSPDRRKRSYSPPPRRRSPFRERRR 660 Query: 538 AKGAHRTDRSRSQGDQGPERGNP 606 + RT R S Q P+R +P Sbjct: 661 SP-PRRTSRWSS---QSPDRRSP 679 >SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 605 Score = 29.1 bits (62), Expect = 4.1 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%) Frame = +1 Query: 397 TGIFQGSSSDVTRCLKARRLRLWNRDC-HQTGFSPSPRQEGTR--RRQGRAK---GAHRT 558 T +F+ R + +R RD HQ F P+ EGTR ++QGR++ T Sbjct: 123 TDVFENREGLEQRTRRIQRRESKTRDRRHQQSFHPNLNPEGTRWIQQQGRSRSRFSLKTT 182 Query: 559 DRSRSQGDQGPERGN 603 RS S P G+ Sbjct: 183 PRSGSSATTTPRSGS 197 >SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 295 Score = 29.1 bits (62), Expect = 4.1 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 1/95 (1%) Frame = +1 Query: 316 SRRKRFR*RLPMGTSWWKASTKRRKTSTGIFQGSSSDVTRCLKARRLRLWNRDCHQTGFS 495 + RK+ + T + S R++ S+ +SS R +K + + R + S Sbjct: 33 NNRKQRNAQSSSSTETSQRSRARKRQSSSSSSTTSSSPERNIKKKSSKAPKRQSSSSS-S 91 Query: 496 PSPRQEGTRRRQGRAK-GAHRTDRSRSQGDQGPER 597 SP+++ T+++Q R K G R+ S S PER Sbjct: 92 SSPKRK-TKKKQHRLKSGNTRSQTSSSSAASSPER 125 >SB_38057| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 203 Score = 29.1 bits (62), Expect = 4.1 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%) Frame = +2 Query: 170 TTCWLPSPVQCSPKTTSDHGDNSRL---HLVTRFQHKGRQGQVPSQSGRAALL 319 TT LPSP + T H D L HL T QH+ + + P R LL Sbjct: 112 TTPTLPSPNNTNTTITQQHHDQPHLHYHHLTTTSQHQAYRYRRPRGGARYQLL 164 >SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1222 Score = 28.7 bits (61), Expect = 5.5 Identities = 17/60 (28%), Positives = 23/60 (38%) Frame = +1 Query: 466 NRDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPERGNPGCRK*VGWFCNGA 645 +++ + PSP G Q + S Q DQ E PGC+K F GA Sbjct: 222 SKEMARNALPPSPSLSGVSSFQRQKTNPPHPAPSPPQADQAKEATCPGCQKTFKLFTEGA 281 >SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 419 Score = 28.7 bits (61), Expect = 5.5 Identities = 10/25 (40%), Positives = 20/25 (80%) Frame = +1 Query: 520 RRRQGRAKGAHRTDRSRSQGDQGPE 594 RR + R +GA +++ +R++G++GPE Sbjct: 357 RRLEARKRGALKSEGTRTEGNRGPE 381 >SB_59279| Best HMM Match : SURF6 (HMM E-Value=3.5) Length = 218 Score = 28.7 bits (61), Expect = 5.5 Identities = 12/46 (26%), Positives = 23/46 (50%) Frame = +1 Query: 469 RDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPERGNP 606 ++C +TG+ P ++ +R R+ + K + + D PE NP Sbjct: 76 KECKKTGYPSYPERKSSRGRKLKTKIVGLIESVSDESDTAPETLNP 121 >SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18) Length = 1425 Score = 28.7 bits (61), Expect = 5.5 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -2 Query: 671 RQYFGTN*NAPLQNHPTYFRHPGFPRSGP*SPCERD 564 R+ FGT PLQ + YF + + G +PC+R+ Sbjct: 608 RERFGTPIQLPLQLYDEYFFNVDYLTDGALAPCDRN 643 >SB_5270| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 601 Score = 28.7 bits (61), Expect = 5.5 Identities = 12/46 (26%), Positives = 23/46 (50%) Frame = +1 Query: 469 RDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPERGNP 606 ++C +TG+ P ++ +R R+ + K + + D PE NP Sbjct: 459 KECKKTGYPSYPERKSSRGRKLKTKIVGLIESVSDESDTAPETLNP 504 >SB_37351| Best HMM Match : DEAD (HMM E-Value=0) Length = 688 Score = 28.3 bits (60), Expect = 7.2 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = +1 Query: 463 WNRDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPERGNPG 609 WNR + + + RQ R QG + G +R + SQG G RG G Sbjct: 605 WNRGGVGSWGNNNNRQSWGGRNQGGSGGYNRYNSDNSQGSFGGNRGFGG 653 >SB_16509| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 371 Score = 28.3 bits (60), Expect = 7.2 Identities = 16/54 (29%), Positives = 25/54 (46%) Frame = +1 Query: 436 CLKARRLRLWNRDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPER 597 CL+ +L R H+ R+ RRR+ R++ R RSR + + ER Sbjct: 306 CLQGLESQLLERS-HRKDRDDDDRERRHRRRRSRSRSRDRRSRSRERRSRSRER 358 >SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) Length = 4303 Score = 28.3 bits (60), Expect = 7.2 Identities = 11/36 (30%), Positives = 19/36 (52%) Frame = +2 Query: 164 PRTTCWLPSPVQCSPKTTSDHGDNSRLHLVTRFQHK 271 P TC L + C+P+ + H DN +L ++ + K Sbjct: 4254 PSKTCELCGKMFCTPEYVAKHEDNEKLRRSSKLERK 4289 >SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16) Length = 411 Score = 27.9 bits (59), Expect = 9.5 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +2 Query: 119 TGPVVLLIKILDWR*PRTTCWLPSPVQCSPKTTSDH 226 TG + + L+ PR +C P PV SP+ + H Sbjct: 253 TGEIEMKDLTLEIPTPRESCQFPGPVSVSPRVATTH 288 >SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9) Length = 496 Score = 27.9 bits (59), Expect = 9.5 Identities = 15/55 (27%), Positives = 20/55 (36%) Frame = +1 Query: 451 RLRLWNRDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPERGNPGCR 615 +LR D + P P G G +G R+ + G P G P CR Sbjct: 304 KLRQVQSDAPKRAHKPLPGVPGRPGTPGDGRGGQRSSTLGTPGKPKPSPGKPPCR 358 >SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3934 Score = 27.9 bits (59), Expect = 9.5 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Frame = +1 Query: 466 NRDCHQTGFSPS-PRQEGTRRRQGRAKGAHRTDRSRSQGDQG-PERGNP 606 NR + T SP+ G R R GRA G +TD+ S ++ P+R P Sbjct: 139 NRPKNNTSISPAFTSSGGDRSRVGRADGKCQTDKRLSLSEESKPKRKVP 187 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 24,332,202 Number of Sequences: 59808 Number of extensions: 540134 Number of successful extensions: 1672 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 1474 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1656 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 2082369341 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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