Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1097
(762 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 57 1e-08
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 55 7e-08
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 54 2e-07
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 52 7e-07
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 52 7e-07
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 50 2e-06
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 47 2e-05
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 36 0.036
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091) 34 0.11
SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08) 32 0.44
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_38057| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_59279| Best HMM Match : SURF6 (HMM E-Value=3.5) 29 5.5
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18) 29 5.5
SB_5270| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 28 7.2
SB_16509| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0) 28 7.2
SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16) 28 9.5
SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9) 28 9.5
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 57.2 bits (132), Expect = 1e-08
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Frame = +3
Query: 276 DKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 452
D DKFQ+ LDV+ F PEEI+ K +G I V + S++F R Y LPEG
Sbjct: 2 DADKFQIATLDVREFKPEEITCKVENGKIKVSGLQRHESEEG-FDSKEFRRCYNLPEGVD 60
Query: 453 PETVESRLSSDGVLTITAPGRYPTPSRESE 542
++ +R++ DG+L + A + P + E++
Sbjct: 61 ESSISTRIAEDGMLHVEALKKSPPATTENK 90
Score = 48.4 bits (110), Expect = 6e-06
Identities = 29/80 (36%), Positives = 38/80 (47%)
Frame = +3
Query: 276 DKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAP 455
D KF + LDV F PEE+ VK G+ + + +RQF R + LP
Sbjct: 96 DDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFNRHFVLPREVDM 154
Query: 456 ETVESRLSSDGVLTITAPGR 515
+T+ RL DGVL I A R
Sbjct: 155 DTLVPRLGKDGVLYIEADKR 174
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 54.8 bits (126), Expect = 7e-08
Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Frame = +3
Query: 273 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449
A K+ ++ LDV+ + PEEIS K +G + V + ++F R + LPEG
Sbjct: 2 AKKNTLEIAKLDVKEYRPEEISFKVENGVVKVQGRHVNEGEFGFEL-KEFRRTFTLPEGI 60
Query: 450 APETVESRLSSDGVLTITAPGRYPTPSRESER 545
PE V SR+S+ G L I A P P E E+
Sbjct: 61 DPENVTSRISNHGHLHIEARKALPKPEAELEK 92
Score = 38.7 bits (86), Expect = 0.005
Identities = 23/79 (29%), Positives = 37/79 (46%)
Frame = +3
Query: 270 KADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449
KA +DKF + +DV F PE I V+ ++V Y + F R++ LP
Sbjct: 92 KAKEDKFSMAIDVAGFPPESIKVQVLGNELLV-NANHEVEHEGHYHAMHFNRQFVLPREV 150
Query: 450 APETVESRLSSDGVLTITA 506
+++ +RL +G L A
Sbjct: 151 DMDSLTTRLDKEGKLHFEA 169
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 53.6 bits (123), Expect = 2e-07
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +3
Query: 234 TRGCIS*LGSSIKADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYIS 410
TR C L ++ + + DK ++ LDV+++ PEEIS+K G I + Y +
Sbjct: 24 TRNCS--LAANTEMEGDKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKSEGEHG-YET 80
Query: 411 RQFVRRYALPEGAAPETVESRLSSDGVLTITA 506
+F R Y LP+G TV SR++ DG+L I A
Sbjct: 81 SEFHRSYNLPDGVDVSTVSSRITGDGLLHIEA 112
Score = 25.8 bits (54), Expect(2) = 0.29
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 258 GSSIKADKDKFQVNLDVQHFSPE 326
G K D +F V LDV FSP+
Sbjct: 133 GDIAKIDDKRFTVTLDVSSFSPD 155
Score = 25.8 bits (54), Expect(2) = 0.29
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 423 RRYALPEGAAPETVESRLSSDGVLTITAPG-RYPTP 527
R + LP+ +++ SRL DG L I A +PTP
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKRILHPTP 196
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 51.6 bits (118), Expect = 7e-07
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = +3
Query: 273 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGV 60
Query: 450 APETVESRLSSDGVLTITAPGRYPTPSRESE 542
V++R+S+ G L I A P P E
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEE 91
Score = 34.7 bits (76), Expect = 0.083
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = +3
Query: 282 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 461
DKF + +DV F P+ I V+ ++V Y + F R++ LP ++
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 155
Query: 462 VESRLSSDGVLTITAPGR 515
+ +RL +G L A R
Sbjct: 156 LTTRLDKEGKLHFEAKKR 173
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 51.6 bits (118), Expect = 7e-07
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = +3
Query: 273 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R +ALPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGV 60
Query: 450 APETVESRLSSDGVLTITAPGRYPTPSRESE 542
V++R+S+ G L I A P P E
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEE 91
Score = 34.7 bits (76), Expect = 0.083
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = +3
Query: 282 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 461
DKF + +DV F P+ I V+ ++V Y + F R++ LP ++
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 155
Query: 462 VESRLSSDGVLTITAPGR 515
+ +RL +G L A R
Sbjct: 156 LTTRLDKEGKLHFEAKKR 173
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +3
Query: 273 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGV 60
Query: 450 APETVESRLSSDGVLTITAPGRYPTPSRESE 542
V++R+S+ G L I A P P E
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEE 91
Score = 48.0 bits (109), Expect = 8e-06
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +3
Query: 282 DKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPE 458
D+ ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVEAS 297
Query: 459 TVESRLSSDGVLTITAPGRYPTPSRESE 542
V++R+S+ G L I A P P E
Sbjct: 298 NVKTRISNHGQLHIEAMKALPGPDGGEE 325
Score = 34.7 bits (76), Expect = 0.083
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = +3
Query: 282 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 461
DKF + +DV F P+ I V+ ++V Y + F R++ LP ++
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 155
Query: 462 VESRLSSDGVLTITAPGR 515
+ +RL +G L A R
Sbjct: 156 LTTRLDKEGKLHFEAKKR 173
Score = 34.7 bits (76), Expect = 0.083
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = +3
Query: 282 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 461
DKF + +DV F P+ I V+ ++V Y + F R++ LP ++
Sbjct: 331 DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 389
Query: 462 VESRLSSDGVLTITAPGR 515
+ +RL +G L A R
Sbjct: 390 LTTRLDKEGKLHFEAKKR 407
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 50.0 bits (114), Expect = 2e-06
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +3
Query: 273 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449
A+++K ++ LDV+ + PEEIS K +G++ V + ++F R + LPEG
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGV 60
Query: 450 APETVESRLSSDGVLTITAPGRYPTPSRESE 542
V++R+S+ G L I A P P E
Sbjct: 61 EASNVKTRISNHGQLHIEAMKALPGPDGGEE 91
Score = 34.7 bits (76), Expect = 0.083
Identities = 21/78 (26%), Positives = 35/78 (44%)
Frame = +3
Query: 282 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 461
DKF + +DV F P+ I V+ ++V Y + F R++ LP ++
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 155
Query: 462 VESRLSSDGVLTITAPGR 515
+ +RL +G L A R
Sbjct: 156 LTTRLDKEGKLHFEAKKR 173
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 46.8 bits (106), Expect = 2e-05
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +3
Query: 276 DKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 452
+++K ++ LDV+ + PEEIS K +G + V + ++F R + LPEG
Sbjct: 4 NENKLEIAKLDVREYRPEEISFKVENGVVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVE 62
Query: 453 PETVESRLSSDGVLTITAPGRYPTP 527
V++R+S+ G L I A P P
Sbjct: 63 ASNVKTRISNHGQLHIEAMKALPEP 87
Score = 37.5 bits (83), Expect = 0.012
Identities = 23/86 (26%), Positives = 40/86 (46%)
Frame = +3
Query: 258 GSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYAL 437
G+ ++ DKF + +DV+ F PE I V+ ++V Y + F R++ L
Sbjct: 89 GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFIL 147
Query: 438 PEGAAPETVESRLSSDGVLTITAPGR 515
P +++ +RL +G L A R
Sbjct: 148 PREVDMDSLTTRLDKEGKLHFEAKKR 173
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 35.9 bits (79), Expect = 0.036
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +3
Query: 261 SSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALP 440
S+ D KF + LDV F PEE+ VK G+ + + +RQF R + LP
Sbjct: 19 SAATKDDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFNRHFVLP 77
Query: 441 E 443
+
Sbjct: 78 Q 78
>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
Length = 761
Score = 34.3 bits (75), Expect = 0.11
Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
Frame = +1
Query: 244 ASRDSVPA*RPTRTS-SKSIWTCSTSR-----RKRFR*RLPMGTSWWKASTKRRKTSTGI 405
+ + S+ RPTRT S+ + S SR R R R R P + W + R ++ T
Sbjct: 385 SEKQSIENGRPTRTQPGGSLNSSSRSRTKSRSRSRIRSRSPARSRSWSHTRSRSRSHT-- 442
Query: 406 FQGSSSDVTRCLKARRLRLWNRDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQ 585
+ S TR R+R +R Q S + R + + R+ RA +HR RSRS+
Sbjct: 443 -RSRSRSHTRSRSRSRIR--SRSRSQELDSRTLRSKKSFERRSRA--SHRESRSRSKSRT 497
Query: 586 GPERGNPGCR 615
ER R
Sbjct: 498 KRERSRKKSR 507
>SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)
Length = 865
Score = 32.3 bits (70), Expect = 0.44
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +1
Query: 439 LKARRLRLWNRDCHQTGFSPSPRQEGTRRRQGRAKGAH---RTDRSRSQGD 582
L+ +R L NR G SPSPR RR R KG+ +T +S S+ D
Sbjct: 441 LRRQRSPLRNRSPRWRGRSPSPRSRRRRRSSDRYKGSFSEGQTGKSESESD 491
>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -1
Query: 249 RCSRELSPWSEVVFGEHWTGDGSQHVVR 166
R SR SP + FG TGDG QH+V+
Sbjct: 100 RASRTPSPSDSIDFGAVETGDGLQHLVK 127
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 29.9 bits (64), Expect = 2.4
Identities = 27/83 (32%), Positives = 38/83 (45%)
Frame = +1
Query: 358 SWWKASTKRRKTSTGIFQGSSSDVTRCLKARRLRLWNRDCHQTGFSPSPRQEGTRRRQGR 537
S+ K+ K RK S Q SS +R R R + D + +SP PR+ R + R
Sbjct: 605 SYRKSRDKGRKRS----QSRSSSRSRSSSYSRSRSRSPDRRKRSYSPPPRRRSPFRERRR 660
Query: 538 AKGAHRTDRSRSQGDQGPERGNP 606
+ RT R S Q P+R +P
Sbjct: 661 SP-PRRTSRWSS---QSPDRRSP 679
>SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 29.1 bits (62), Expect = 4.1
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Frame = +1
Query: 397 TGIFQGSSSDVTRCLKARRLRLWNRDC-HQTGFSPSPRQEGTR--RRQGRAK---GAHRT 558
T +F+ R + +R RD HQ F P+ EGTR ++QGR++ T
Sbjct: 123 TDVFENREGLEQRTRRIQRRESKTRDRRHQQSFHPNLNPEGTRWIQQQGRSRSRFSLKTT 182
Query: 559 DRSRSQGDQGPERGN 603
RS S P G+
Sbjct: 183 PRSGSSATTTPRSGS 197
>SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 29.1 bits (62), Expect = 4.1
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Frame = +1
Query: 316 SRRKRFR*RLPMGTSWWKASTKRRKTSTGIFQGSSSDVTRCLKARRLRLWNRDCHQTGFS 495
+ RK+ + T + S R++ S+ +SS R +K + + R + S
Sbjct: 33 NNRKQRNAQSSSSTETSQRSRARKRQSSSSSSTTSSSPERNIKKKSSKAPKRQSSSSS-S 91
Query: 496 PSPRQEGTRRRQGRAK-GAHRTDRSRSQGDQGPER 597
SP+++ T+++Q R K G R+ S S PER
Sbjct: 92 SSPKRK-TKKKQHRLKSGNTRSQTSSSSAASSPER 125
>SB_38057| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Frame = +2
Query: 170 TTCWLPSPVQCSPKTTSDHGDNSRL---HLVTRFQHKGRQGQVPSQSGRAALL 319
TT LPSP + T H D L HL T QH+ + + P R LL
Sbjct: 112 TTPTLPSPNNTNTTITQQHHDQPHLHYHHLTTTSQHQAYRYRRPRGGARYQLL 164
>SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1222
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/60 (28%), Positives = 23/60 (38%)
Frame = +1
Query: 466 NRDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPERGNPGCRK*VGWFCNGA 645
+++ + PSP G Q + S Q DQ E PGC+K F GA
Sbjct: 222 SKEMARNALPPSPSLSGVSSFQRQKTNPPHPAPSPPQADQAKEATCPGCQKTFKLFTEGA 281
>SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 419
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/25 (40%), Positives = 20/25 (80%)
Frame = +1
Query: 520 RRRQGRAKGAHRTDRSRSQGDQGPE 594
RR + R +GA +++ +R++G++GPE
Sbjct: 357 RRLEARKRGALKSEGTRTEGNRGPE 381
>SB_59279| Best HMM Match : SURF6 (HMM E-Value=3.5)
Length = 218
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 469 RDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPERGNP 606
++C +TG+ P ++ +R R+ + K + + D PE NP
Sbjct: 76 KECKKTGYPSYPERKSSRGRKLKTKIVGLIESVSDESDTAPETLNP 121
>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
Length = 1425
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 671 RQYFGTN*NAPLQNHPTYFRHPGFPRSGP*SPCERD 564
R+ FGT PLQ + YF + + G +PC+R+
Sbjct: 608 RERFGTPIQLPLQLYDEYFFNVDYLTDGALAPCDRN 643
>SB_5270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 601
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +1
Query: 469 RDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPERGNP 606
++C +TG+ P ++ +R R+ + K + + D PE NP
Sbjct: 459 KECKKTGYPSYPERKSSRGRKLKTKIVGLIESVSDESDTAPETLNP 504
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = +1
Query: 463 WNRDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPERGNPG 609
WNR + + + RQ R QG + G +R + SQG G RG G
Sbjct: 605 WNRGGVGSWGNNNNRQSWGGRNQGGSGGYNRYNSDNSQGSFGGNRGFGG 653
>SB_16509| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 436 CLKARRLRLWNRDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPER 597
CL+ +L R H+ R+ RRR+ R++ R RSR + + ER
Sbjct: 306 CLQGLESQLLERS-HRKDRDDDDRERRHRRRRSRSRSRDRRSRSRERRSRSRER 358
>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 4303
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 164 PRTTCWLPSPVQCSPKTTSDHGDNSRLHLVTRFQHK 271
P TC L + C+P+ + H DN +L ++ + K
Sbjct: 4254 PSKTCELCGKMFCTPEYVAKHEDNEKLRRSSKLERK 4289
>SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)
Length = 411
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 119 TGPVVLLIKILDWR*PRTTCWLPSPVQCSPKTTSDH 226
TG + + L+ PR +C P PV SP+ + H
Sbjct: 253 TGEIEMKDLTLEIPTPRESCQFPGPVSVSPRVATTH 288
>SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)
Length = 496
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/55 (27%), Positives = 20/55 (36%)
Frame = +1
Query: 451 RLRLWNRDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPERGNPGCR 615
+LR D + P P G G +G R+ + G P G P CR
Sbjct: 304 KLRQVQSDAPKRAHKPLPGVPGRPGTPGDGRGGQRSSTLGTPGKPKPSPGKPPCR 358
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 27.9 bits (59), Expect = 9.5
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 466 NRDCHQTGFSPS-PRQEGTRRRQGRAKGAHRTDRSRSQGDQG-PERGNP 606
NR + T SP+ G R R GRA G +TD+ S ++ P+R P
Sbjct: 139 NRPKNNTSISPAFTSSGGDRSRVGRADGKCQTDKRLSLSEESKPKRKVP 187
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,332,202
Number of Sequences: 59808
Number of extensions: 540134
Number of successful extensions: 1672
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1656
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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