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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1097
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)                 57   1e-08
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)                 55   7e-08
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)                   54   2e-07
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)                 52   7e-07
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)                 52   7e-07
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)                       50   2e-06
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)               50   2e-06
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)                   47   2e-05
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)                 36   0.036
SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)             34   0.11 
SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)               32   0.44 
SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_38057| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.5  
SB_59279| Best HMM Match : SURF6 (HMM E-Value=3.5)                     29   5.5  
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)             29   5.5  
SB_5270| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.5  
SB_37351| Best HMM Match : DEAD (HMM E-Value=0)                        28   7.2  
SB_16509| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   7.2  
SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)                28   9.5  
SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)                28   9.5  
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
          Length = 185

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
 Frame = +3

Query: 276 DKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 452
           D DKFQ+  LDV+ F PEEI+ K  +G I V            + S++F R Y LPEG  
Sbjct: 2   DADKFQIATLDVREFKPEEITCKVENGKIKVSGLQRHESEEG-FDSKEFRRCYNLPEGVD 60

Query: 453 PETVESRLSSDGVLTITAPGRYPTPSRESE 542
             ++ +R++ DG+L + A  + P  + E++
Sbjct: 61  ESSISTRIAEDGMLHVEALKKSPPATTENK 90



 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 29/80 (36%), Positives = 38/80 (47%)
 Frame = +3

Query: 276 DKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAP 455
           D  KF + LDV  F PEE+ VK   G+ +             + +RQF R + LP     
Sbjct: 96  DDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFNRHFVLPREVDM 154

Query: 456 ETVESRLSSDGVLTITAPGR 515
           +T+  RL  DGVL I A  R
Sbjct: 155 DTLVPRLGKDGVLYIEADKR 174


>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
          Length = 189

 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
 Frame = +3

Query: 273 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449
           A K+  ++  LDV+ + PEEIS K  +G + V             + ++F R + LPEG 
Sbjct: 2   AKKNTLEIAKLDVKEYRPEEISFKVENGVVKVQGRHVNEGEFGFEL-KEFRRTFTLPEGI 60

Query: 450 APETVESRLSSDGVLTITAPGRYPTPSRESER 545
            PE V SR+S+ G L I A    P P  E E+
Sbjct: 61  DPENVTSRISNHGHLHIEARKALPKPEAELEK 92



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 23/79 (29%), Positives = 37/79 (46%)
 Frame = +3

Query: 270 KADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449
           KA +DKF + +DV  F PE I V+     ++V            Y +  F R++ LP   
Sbjct: 92  KAKEDKFSMAIDVAGFPPESIKVQVLGNELLV-NANHEVEHEGHYHAMHFNRQFVLPREV 150

Query: 450 APETVESRLSSDGVLTITA 506
             +++ +RL  +G L   A
Sbjct: 151 DMDSLTTRLDKEGKLHFEA 169


>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
          Length = 210

 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
 Frame = +3

Query: 234 TRGCIS*LGSSIKADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYIS 410
           TR C   L ++ + + DK ++  LDV+++ PEEIS+K   G I +            Y +
Sbjct: 24  TRNCS--LAANTEMEGDKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKSEGEHG-YET 80

Query: 411 RQFVRRYALPEGAAPETVESRLSSDGVLTITA 506
            +F R Y LP+G    TV SR++ DG+L I A
Sbjct: 81  SEFHRSYNLPDGVDVSTVSSRITGDGLLHIEA 112



 Score = 25.8 bits (54), Expect(2) = 0.29
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 258 GSSIKADKDKFQVNLDVQHFSPE 326
           G   K D  +F V LDV  FSP+
Sbjct: 133 GDIAKIDDKRFTVTLDVSSFSPD 155



 Score = 25.8 bits (54), Expect(2) = 0.29
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 423 RRYALPEGAAPETVESRLSSDGVLTITAPG-RYPTP 527
           R + LP+    +++ SRL  DG L I A    +PTP
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKRILHPTP 196


>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
          Length = 190

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
 Frame = +3

Query: 273 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449
           A+++K ++  LDV+ + PEEIS K  +G++ V             + ++F R +ALPEG 
Sbjct: 2   ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGV 60

Query: 450 APETVESRLSSDGVLTITAPGRYPTPSRESE 542
               V++R+S+ G L I A    P P    E
Sbjct: 61  EASNVKTRISNHGQLHIEAMKALPGPDGGEE 91



 Score = 34.7 bits (76), Expect = 0.083
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = +3

Query: 282 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 461
           DKF + +DV  F P+ I V+     ++V            Y +  F R++ LP     ++
Sbjct: 97  DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 155

Query: 462 VESRLSSDGVLTITAPGR 515
           + +RL  +G L   A  R
Sbjct: 156 LTTRLDKEGKLHFEAKKR 173


>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
          Length = 190

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
 Frame = +3

Query: 273 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449
           A+++K ++  LDV+ + PEEIS K  +G++ V             + ++F R +ALPEG 
Sbjct: 2   ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFALPEGV 60

Query: 450 APETVESRLSSDGVLTITAPGRYPTPSRESE 542
               V++R+S+ G L I A    P P    E
Sbjct: 61  EASNVKTRISNHGQLHIEAMKALPGPDGGEE 91



 Score = 34.7 bits (76), Expect = 0.083
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = +3

Query: 282 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 461
           DKF + +DV  F P+ I V+     ++V            Y +  F R++ LP     ++
Sbjct: 97  DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 155

Query: 462 VESRLSSDGVLTITAPGR 515
           + +RL  +G L   A  R
Sbjct: 156 LTTRLDKEGKLHFEAKKR 173


>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
          Length = 424

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
 Frame = +3

Query: 273 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449
           A+++K ++  LDV+ + PEEIS K  +G++ V             + ++F R + LPEG 
Sbjct: 2   ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGV 60

Query: 450 APETVESRLSSDGVLTITAPGRYPTPSRESE 542
               V++R+S+ G L I A    P P    E
Sbjct: 61  EASNVKTRISNHGQLHIEAMKALPGPDGGEE 91



 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
 Frame = +3

Query: 282 DKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPE 458
           D+ ++  LDV+ + PEEIS K  +G++ V             + ++F R + LPEG    
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVEAS 297

Query: 459 TVESRLSSDGVLTITAPGRYPTPSRESE 542
            V++R+S+ G L I A    P P    E
Sbjct: 298 NVKTRISNHGQLHIEAMKALPGPDGGEE 325



 Score = 34.7 bits (76), Expect = 0.083
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = +3

Query: 282 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 461
           DKF + +DV  F P+ I V+     ++V            Y +  F R++ LP     ++
Sbjct: 97  DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 155

Query: 462 VESRLSSDGVLTITAPGR 515
           + +RL  +G L   A  R
Sbjct: 156 LTTRLDKEGKLHFEAKKR 173



 Score = 34.7 bits (76), Expect = 0.083
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = +3

Query: 282 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 461
           DKF + +DV  F P+ I V+     ++V            Y +  F R++ LP     ++
Sbjct: 331 DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 389

Query: 462 VESRLSSDGVLTITAPGR 515
           + +RL  +G L   A  R
Sbjct: 390 LTTRLDKEGKLHFEAKKR 407


>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
 Frame = +3

Query: 273 ADKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGA 449
           A+++K ++  LDV+ + PEEIS K  +G++ V             + ++F R + LPEG 
Sbjct: 2   ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGV 60

Query: 450 APETVESRLSSDGVLTITAPGRYPTPSRESE 542
               V++R+S+ G L I A    P P    E
Sbjct: 61  EASNVKTRISNHGQLHIEAMKALPGPDGGEE 91



 Score = 34.7 bits (76), Expect = 0.083
 Identities = 21/78 (26%), Positives = 35/78 (44%)
 Frame = +3

Query: 282 DKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAAPET 461
           DKF + +DV  F P+ I V+     ++V            Y +  F R++ LP     ++
Sbjct: 97  DKFSMAMDVTGFPPDSIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFVLPREVDMDS 155

Query: 462 VESRLSSDGVLTITAPGR 515
           + +RL  +G L   A  R
Sbjct: 156 LTTRLDKEGKLHFEAKKR 173


>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
          Length = 695

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
 Frame = +3

Query: 276 DKDKFQV-NLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALPEGAA 452
           +++K ++  LDV+ + PEEIS K  +G + V             + ++F R + LPEG  
Sbjct: 4   NENKLEIAKLDVREYRPEEISFKVENGVVKVQGRHVNEGPFGFEL-KEFRRTFTLPEGVE 62

Query: 453 PETVESRLSSDGVLTITAPGRYPTP 527
              V++R+S+ G L I A    P P
Sbjct: 63  ASNVKTRISNHGQLHIEAMKALPEP 87



 Score = 37.5 bits (83), Expect = 0.012
 Identities = 23/86 (26%), Positives = 40/86 (46%)
 Frame = +3

Query: 258 GSSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYAL 437
           G+  ++  DKF + +DV+ F PE I V+     ++V            Y +  F R++ L
Sbjct: 89  GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLV-SANHEVEHEGHYHAMHFNRQFIL 147

Query: 438 PEGAAPETVESRLSSDGVLTITAPGR 515
           P     +++ +RL  +G L   A  R
Sbjct: 148 PREVDMDSLTTRLDKEGKLHFEAKKR 173


>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
          Length = 259

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +3

Query: 261 SSIKADKDKFQVNLDVQHFSPEEISVKTADGYIVVXXXXXXXXXXXXYISRQFVRRYALP 440
           S+   D  KF + LDV  F PEE+ VK   G+ +             + +RQF R + LP
Sbjct: 19  SAATKDDTKFTLALDVSDFKPEEVDVKVY-GHELSVRARQECEEHGFFTARQFNRHFVLP 77

Query: 441 E 443
           +
Sbjct: 78  Q 78


>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
          Length = 761

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
 Frame = +1

Query: 244 ASRDSVPA*RPTRTS-SKSIWTCSTSR-----RKRFR*RLPMGTSWWKASTKRRKTSTGI 405
           + + S+   RPTRT    S+ + S SR     R R R R P  +  W  +  R ++ T  
Sbjct: 385 SEKQSIENGRPTRTQPGGSLNSSSRSRTKSRSRSRIRSRSPARSRSWSHTRSRSRSHT-- 442

Query: 406 FQGSSSDVTRCLKARRLRLWNRDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQ 585
            +  S   TR     R+R  +R   Q   S + R + +  R+ RA  +HR  RSRS+   
Sbjct: 443 -RSRSRSHTRSRSRSRIR--SRSRSQELDSRTLRSKKSFERRSRA--SHRESRSRSKSRT 497

Query: 586 GPERGNPGCR 615
             ER     R
Sbjct: 498 KRERSRKKSR 507


>SB_10690| Best HMM Match : Pkinase (HMM E-Value=6.4e-08)
          Length = 865

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 439 LKARRLRLWNRDCHQTGFSPSPRQEGTRRRQGRAKGAH---RTDRSRSQGD 582
           L+ +R  L NR     G SPSPR    RR   R KG+    +T +S S+ D
Sbjct: 441 LRRQRSPLRNRSPRWRGRSPSPRSRRRRRSSDRYKGSFSEGQTGKSESESD 491


>SB_47601| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 249 RCSRELSPWSEVVFGEHWTGDGSQHVVR 166
           R SR  SP   + FG   TGDG QH+V+
Sbjct: 100 RASRTPSPSDSIDFGAVETGDGLQHLVK 127


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 27/83 (32%), Positives = 38/83 (45%)
 Frame = +1

Query: 358 SWWKASTKRRKTSTGIFQGSSSDVTRCLKARRLRLWNRDCHQTGFSPSPRQEGTRRRQGR 537
           S+ K+  K RK S    Q  SS  +R     R R  + D  +  +SP PR+    R + R
Sbjct: 605 SYRKSRDKGRKRS----QSRSSSRSRSSSYSRSRSRSPDRRKRSYSPPPRRRSPFRERRR 660

Query: 538 AKGAHRTDRSRSQGDQGPERGNP 606
           +    RT R  S   Q P+R +P
Sbjct: 661 SP-PRRTSRWSS---QSPDRRSP 679


>SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
 Frame = +1

Query: 397 TGIFQGSSSDVTRCLKARRLRLWNRDC-HQTGFSPSPRQEGTR--RRQGRAK---GAHRT 558
           T +F+       R  + +R     RD  HQ  F P+   EGTR  ++QGR++       T
Sbjct: 123 TDVFENREGLEQRTRRIQRRESKTRDRRHQQSFHPNLNPEGTRWIQQQGRSRSRFSLKTT 182

Query: 559 DRSRSQGDQGPERGN 603
            RS S     P  G+
Sbjct: 183 PRSGSSATTTPRSGS 197


>SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
 Frame = +1

Query: 316 SRRKRFR*RLPMGTSWWKASTKRRKTSTGIFQGSSSDVTRCLKARRLRLWNRDCHQTGFS 495
           + RK+   +    T   + S  R++ S+     +SS   R +K +  +   R    +  S
Sbjct: 33  NNRKQRNAQSSSSTETSQRSRARKRQSSSSSSTTSSSPERNIKKKSSKAPKRQSSSSS-S 91

Query: 496 PSPRQEGTRRRQGRAK-GAHRTDRSRSQGDQGPER 597
            SP+++ T+++Q R K G  R+  S S     PER
Sbjct: 92  SSPKRK-TKKKQHRLKSGNTRSQTSSSSAASSPER 125


>SB_38057| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = +2

Query: 170 TTCWLPSPVQCSPKTTSDHGDNSRL---HLVTRFQHKGRQGQVPSQSGRAALL 319
           TT  LPSP   +   T  H D   L   HL T  QH+  + + P    R  LL
Sbjct: 112 TTPTLPSPNNTNTTITQQHHDQPHLHYHHLTTTSQHQAYRYRRPRGGARYQLL 164


>SB_50061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1222

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/60 (28%), Positives = 23/60 (38%)
 Frame = +1

Query: 466 NRDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPERGNPGCRK*VGWFCNGA 645
           +++  +    PSP   G    Q +         S  Q DQ  E   PGC+K    F  GA
Sbjct: 222 SKEMARNALPPSPSLSGVSSFQRQKTNPPHPAPSPPQADQAKEATCPGCQKTFKLFTEGA 281


>SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 419

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/25 (40%), Positives = 20/25 (80%)
 Frame = +1

Query: 520 RRRQGRAKGAHRTDRSRSQGDQGPE 594
           RR + R +GA +++ +R++G++GPE
Sbjct: 357 RRLEARKRGALKSEGTRTEGNRGPE 381


>SB_59279| Best HMM Match : SURF6 (HMM E-Value=3.5)
          Length = 218

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +1

Query: 469 RDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPERGNP 606
           ++C +TG+   P ++ +R R+ + K     +    + D  PE  NP
Sbjct: 76  KECKKTGYPSYPERKSSRGRKLKTKIVGLIESVSDESDTAPETLNP 121


>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
          Length = 1425

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 671 RQYFGTN*NAPLQNHPTYFRHPGFPRSGP*SPCERD 564
           R+ FGT    PLQ +  YF +  +   G  +PC+R+
Sbjct: 608 RERFGTPIQLPLQLYDEYFFNVDYLTDGALAPCDRN 643


>SB_5270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 601

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +1

Query: 469 RDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPERGNP 606
           ++C +TG+   P ++ +R R+ + K     +    + D  PE  NP
Sbjct: 459 KECKKTGYPSYPERKSSRGRKLKTKIVGLIESVSDESDTAPETLNP 504


>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 688

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 463 WNRDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPERGNPG 609
           WNR    +  + + RQ    R QG + G +R +   SQG  G  RG  G
Sbjct: 605 WNRGGVGSWGNNNNRQSWGGRNQGGSGGYNRYNSDNSQGSFGGNRGFGG 653


>SB_16509| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +1

Query: 436 CLKARRLRLWNRDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPER 597
           CL+    +L  R  H+       R+   RRR+ R++   R  RSR +  +  ER
Sbjct: 306 CLQGLESQLLERS-HRKDRDDDDRERRHRRRRSRSRSRDRRSRSRERRSRSRER 358


>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 164  PRTTCWLPSPVQCSPKTTSDHGDNSRLHLVTRFQHK 271
            P  TC L   + C+P+  + H DN +L   ++ + K
Sbjct: 4254 PSKTCELCGKMFCTPEYVAKHEDNEKLRRSSKLERK 4289


>SB_32465| Best HMM Match : Chromo (HMM E-Value=3.5e-16)
          Length = 411

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 119 TGPVVLLIKILDWR*PRTTCWLPSPVQCSPKTTSDH 226
           TG + +    L+   PR +C  P PV  SP+  + H
Sbjct: 253 TGEIEMKDLTLEIPTPRESCQFPGPVSVSPRVATTH 288


>SB_46725| Best HMM Match : Extensin_2 (HMM E-Value=1.9)
          Length = 496

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/55 (27%), Positives = 20/55 (36%)
 Frame = +1

Query: 451 RLRLWNRDCHQTGFSPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPERGNPGCR 615
           +LR    D  +    P P   G     G  +G  R+    + G   P  G P CR
Sbjct: 304 KLRQVQSDAPKRAHKPLPGVPGRPGTPGDGRGGQRSSTLGTPGKPKPSPGKPPCR 358


>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3934

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 466 NRDCHQTGFSPS-PRQEGTRRRQGRAKGAHRTDRSRSQGDQG-PERGNP 606
           NR  + T  SP+     G R R GRA G  +TD+  S  ++  P+R  P
Sbjct: 139 NRPKNNTSISPAFTSSGGDRSRVGRADGKCQTDKRLSLSEESKPKRKVP 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,332,202
Number of Sequences: 59808
Number of extensions: 540134
Number of successful extensions: 1672
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1656
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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