Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1097
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.3  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 53  KYNQICLFYHSCWVTGPAFVTTTGPVVLLIKILDW 157
           +Y+ + +++H     G   +   GP VLL+ +L W
Sbjct: 199 EYSMLLVYFHLQRHMGNFLIQVYGPCVLLV-VLSW 232


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 517 TRRRQGRAKGAHRTDRSRSQGDQGPERGNP 606
           T++ Q  + GA     S  Q  Q P+RG+P
Sbjct: 10  TQQSQQPSSGAPGPQPSPHQSPQAPQRGSP 39


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 365 HHDVPIGSLHRNLFRREVLHVQ 300
           H D+PI   H +L   +VL+ Q
Sbjct: 64  HRDLPIYQSHHHLHHHQVLYQQ 85


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -2

Query: 311 LHVQIDLELVLVGLYAGTESRDAAASCLHGLK*SSESTGQATAASMSFGVSANPK 147
           LH+QI + +    + AG         CL G   ++ S  +AT+ +M   +S + K
Sbjct: 513 LHLQIRVGVHSGAVVAGIVGLKMPRYCLFGDSVNTASRMEATSQAMQIHISQSTK 567


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,818
Number of Sequences: 438
Number of extensions: 4768
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)