Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1097
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE) i...    34   0.12 
At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein (HS...    32   0.36 
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote...    32   0.36 
At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein (HS...    32   0.48 
At1g53540.1 68414.m06074 17.6 kDa class I small heat shock prote...    31   0.63 
At5g53800.1 68418.m06685 expressed protein                             30   1.9  
At4g14830.1 68417.m02280 expressed protein                             28   5.9  
At3g48425.1 68416.m05286 endonuclease/exonuclease/phosphatase fa...    28   5.9  
At1g66720.1 68414.m07584 S-adenosyl-L-methionine:carboxyl methyl...    28   5.9  
At3g20550.1 68416.m02601 forkhead-associated domain-containing p...    28   7.8  

>At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE)
           identical to C2H2 zinc-finger protein SERRATE
           GI:14486602 from [Arabidopsis thaliana]
          Length = 720

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 16/32 (50%), Positives = 17/32 (53%)
 Frame = +1

Query: 514 GTRRRQGRAKGAHRTDRSRSQGDQGPERGNPG 609
           G R R GRA G  R DRS  Q     + GNPG
Sbjct: 582 GRRERDGRANGNDRNDRSEDQQRGDNDGGNPG 613


>At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein
           (HSP17.4-CI) identical to 17.4 kDa class I heat shock
           protein SP:P19036 from [Arabidopsis thaliana]
          Length = 156

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 15/34 (44%), Positives = 24/34 (70%)
 Frame = +3

Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAP 509
           S +F+RR+ LPE A  E V++ +  +GVL++T P
Sbjct: 108 SGKFMRRFRLPENAKVEEVKASM-ENGVLSVTVP 140


>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
           (HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
           crystallin family; identified in Scharf, K-D., et al,
           Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 153

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAP 509
           S QF RR+ LPE    + V++ +  +GVLT+T P
Sbjct: 105 SGQFTRRFRLPENVKMDQVKAAM-ENGVLTVTVP 137


>At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein
           (HSP18.1-CI) identical to 18.2 kDa class I heat shock
           protein (HSP 18.2) (SP:P19037)[Arabidopsis thaliana];
           contains Pfam profile: PF00011 Hsp20/alpha crystallin
           family
          Length = 161

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +3

Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAP 509
           S +F+RR+ LPE A  E V++ +  +GVLT+  P
Sbjct: 111 SGKFMRRFRLPENAKMEEVKATM-ENGVLTVVVP 143


>At1g53540.1 68414.m06074 17.6 kDa class I small heat shock protein
           (HSP17.6C-CI) (AA 1-156) identical to (17.6 kDa class I
           heat shock protein (HSP 17.6) (AA 1-156)(SP:P13853)
           (GI:4376161) (Arabidopsis thaliana) (Nucleic Acids Res.
           17 (19), 7995 (1989))
          Length = 157

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +3

Query: 408 SRQFVRRYALPEGAAPETVESRLSSDGVLTITAP 509
           S +F RR+ LPE A  E +++ +  +GVL++T P
Sbjct: 109 SGKFTRRFRLPENAKMEEIKASM-ENGVLSVTVP 141


>At5g53800.1 68418.m06685 expressed protein
          Length = 351

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
 Frame = +1

Query: 367 KASTKRRKTSTGIFQGSSSDVTRCLKA-RRLRLWNRDCHQTGF-SPSPRQEGTRRRQGRA 540
           + S++ + + +G   G   DV+R  ++ RR +  N    ++G  S S  ++  RRR  + 
Sbjct: 24  RKSSREKPSGSGKDSGEEKDVSRRRESKRRTKDGNDSGSESGLESGSESEKEERRRSRKD 83

Query: 541 KGAHRTDRSRSQ 576
           +G  ++DR  S+
Sbjct: 84  RGKRKSDRKSSR 95


>At4g14830.1 68417.m02280 expressed protein
          Length = 152

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 420 VRRYALPEGAAPETVESRLSSDGVLTITAP 509
           V R+ LPE   PE V      DG L +T P
Sbjct: 109 VWRFRLPESTRPELVTVDCDGDGELIVTVP 138


>At3g48425.1 68416.m05286 endonuclease/exonuclease/phosphatase
           family protein similar to SP|P51173|APEA_DICDI
           DNA-(apurinic or apyrimidinic site) lyase (EC
           4.2.99.18)(Class II
           apurinic/apyrimidinic(AP)-endonuclease) {Dictyostelium
           discoideum}; contains Pfam profile PF03372:
           Endonuclease/Exonuclease/phosphatase family
          Length = 364

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 472 DCHQTGFSPSPR-QEGTRRRQGRAKGAHRTDRSRSQGDQG-PERGNP 606
           DC Q GF+PS R + G   ++GR   A+R      + + G    GNP
Sbjct: 253 DCGQPGFTPSERGRFGATIKEGRLVDAYRYLHKEQEMESGFSWSGNP 299


>At1g66720.1 68414.m07584 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to
           defense-related protein cjs1 [Brassica
           carinata][GI:14009292][Mol Plant Pathol (2001)
           2(3):159-169]
          Length = 352

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 418 SSDVTRCLKARRLRLWNRDCHQTGFS 495
           +S + + +  R   LWNRD H TGF+
Sbjct: 151 TSKIPKGISDRNSPLWNRDMHCTGFN 176


>At3g20550.1 68416.m02601 forkhead-associated domain-containing
           protein / FHA domain-containing protein weak similarity
           to SP|Q28147 Nuclear inhibitor of protein phosphatase-1
           (NIPP-1) (Protein phosphatase 1, regulatory inhibitor
           subunit 8) {Bos taurus}; contains Pfam profile PF00498:
           FHA domain
          Length = 314

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +1

Query: 493 SPSPRQEGTRRRQGRAKGAHRTDRSRSQGDQGPERGNPGCRK 618
           SPSPR +  RR    A+G     RSR + D G ER     R+
Sbjct: 7   SPSPRTKRLRR----ARGEKEIGRSREREDDGREREKRNSRE 44


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,831,003
Number of Sequences: 28952
Number of extensions: 362770
Number of successful extensions: 1082
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)