Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1096
         (419 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    23   1.6  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   3.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      20   8.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      20   8.5  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    20   8.5  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    20   8.5  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    20   8.5  

>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 146 KFVTTFLPSLFEMRVSGVIIFT 81
           KFV +    LF+ R+ G++ FT
Sbjct: 10  KFVNSIRILLFQSRIFGLVTFT 31


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 376 SSIMIHSVQFFTSLNLKQAKDFCS 305
           SSIM+H +    SLN ++ K  CS
Sbjct: 255 SSIMMHHLVNPQSLNHQEVKAECS 278


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 169 GIPGENLPFDIHN 207
           G PG  LPF  HN
Sbjct: 118 GHPGAALPFFCHN 130


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 169 GIPGENLPFDIHN 207
           G PG  LPF  HN
Sbjct: 10  GHPGAALPFFCHN 22


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 139 TNFVRNHSNGGIPGENLPFD 198
           TNF  N +     G + PFD
Sbjct: 139 TNFNNNSNGASSVGSSSPFD 158


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 139 TNFVRNHSNGGIPGENLPFD 198
           TNF  N +     G + PFD
Sbjct: 87  TNFNNNSNGASSVGSSSPFD 106


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 20.2 bits (40), Expect = 8.5
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 139 TNFVRNHSNGGIPGENLPFD 198
           TNF  N +     G + PFD
Sbjct: 270 TNFNNNSNGASSVGSSSPFD 289


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,231
Number of Sequences: 336
Number of extensions: 1880
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9279512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)