Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1096
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    26   2.1  
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    26   2.7  
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    25   4.8  
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ...    25   6.3  
SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom...    25   6.3  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    25   6.3  
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c...    24   8.4  

>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +2

Query: 152 ETILTAVFLARIYPSTFTTVTS*HCISSYMRALDFSTLSHHPSPASEEVIQ 304
           ++ L  V    + P+        +C  +Y+    F+ L HHP     E IQ
Sbjct: 713 KSTLIKVLTGELLPTVGEIYQHENCRIAYVAQAAFTHLGHHPDKTPSEYIQ 763


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 146 KFVTTFLPSLFEMRVSGVIIFTFLRFSSRYHSKKQKFDFANSTVGI 9
           K++   L SL  + +S V+    + F    +SKKQK   ++ST+ +
Sbjct: 438 KYIAGHLTSLIAIFISTVLHVVNIFFLKHQNSKKQKSLASSSTIDL 483


>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1471

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 216 LVTVVNVEG*ILARNTAVRMVSHEIRYHISTQFV 115
           L+T  NV   +L R+  V ++  E  YHI  Q +
Sbjct: 233 LITGANVNTYLLERSRVVSLLKGERNYHIFYQLI 266


>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 621

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 161 EWFLTKFVTTFLPSLFEMR 105
           +WF TK  +  LPS+F++R
Sbjct: 16  KWFNTKLSSRDLPSVFDLR 34


>SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = +1

Query: 79  NVKMITPLTRISNKLGRN 132
           NVK +TP  RI N LG N
Sbjct: 134 NVKKLTPKARILNLLGYN 151


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 58  YLLENRRNVKMITPLTRISNKLGRNVVTN 144
           YL   R   +  TPL+ ISN L  N V N
Sbjct: 214 YLESLREKRRTYTPLSEISNGLNSNGVEN 242


>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 438

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 133 VVTNFVRNHSNGGIPGENLPF 195
           +    +RN ++ G P ENLPF
Sbjct: 204 IALQMIRNINDLGTPDENLPF 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,660,238
Number of Sequences: 5004
Number of extensions: 32431
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)