BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1096 (419 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 26 2.1 SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 26 2.7 SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 25 4.8 SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 25 6.3 SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pom... 25 6.3 SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 6.3 SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 24 8.4 >SPCC417.08 |tef3||translation elongation factor eEF3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1047 Score = 26.2 bits (55), Expect = 2.1 Identities = 13/51 (25%), Positives = 21/51 (41%) Frame = +2 Query: 152 ETILTAVFLARIYPSTFTTVTS*HCISSYMRALDFSTLSHHPSPASEEVIQ 304 ++ L V + P+ +C +Y+ F+ L HHP E IQ Sbjct: 713 KSTLIKVLTGELLPTVGEIYQHENCRIAYVAQAAFTHLGHHPDKTPSEYIQ 763 >SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schizosaccharomyces pombe|chr 1|||Manual Length = 499 Score = 25.8 bits (54), Expect = 2.7 Identities = 14/46 (30%), Positives = 25/46 (54%) Frame = -1 Query: 146 KFVTTFLPSLFEMRVSGVIIFTFLRFSSRYHSKKQKFDFANSTVGI 9 K++ L SL + +S V+ + F +SKKQK ++ST+ + Sbjct: 438 KYIAGHLTSLIAIFISTVLHVVNIFFLKHQNSKKQKSLASSSTIDL 483 >SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr 2|||Manual Length = 1471 Score = 25.0 bits (52), Expect = 4.8 Identities = 12/34 (35%), Positives = 18/34 (52%) Frame = -3 Query: 216 LVTVVNVEG*ILARNTAVRMVSHEIRYHISTQFV 115 L+T NV +L R+ V ++ E YHI Q + Sbjct: 233 LITGANVNTYLLERSRVVSLLKGERNYHIFYQLI 266 >SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr 1|||Manual Length = 621 Score = 24.6 bits (51), Expect = 6.3 Identities = 9/19 (47%), Positives = 14/19 (73%) Frame = -1 Query: 161 EWFLTKFVTTFLPSLFEMR 105 +WF TK + LPS+F++R Sbjct: 16 KWFNTKLSSRDLPSVFDLR 34 >SPAC24C9.02c |||cytochrome c1 heme lyase|Schizosaccharomyces pombe|chr 1|||Manual Length = 216 Score = 24.6 bits (51), Expect = 6.3 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = +1 Query: 79 NVKMITPLTRISNKLGRN 132 NVK +TP RI N LG N Sbjct: 134 NVKKLTPKARILNLLGYN 151 >SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 494 Score = 24.6 bits (51), Expect = 6.3 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = +1 Query: 58 YLLENRRNVKMITPLTRISNKLGRNVVTN 144 YL R + TPL+ ISN L N V N Sbjct: 214 YLESLREKRRTYTPLSEISNGLNSNGVEN 242 >SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 438 Score = 24.2 bits (50), Expect = 8.4 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +1 Query: 133 VVTNFVRNHSNGGIPGENLPF 195 + +RN ++ G P ENLPF Sbjct: 204 IALQMIRNINDLGTPDENLPF 224 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,660,238 Number of Sequences: 5004 Number of extensions: 32431 Number of successful extensions: 97 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 95 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 97 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 148351622 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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