Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1096
         (419 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28292| Best HMM Match : RVT_1 (HMM E-Value=2.3e-38)                 33   0.13 
SB_55184| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.89 
SB_20701| Best HMM Match : DUF1027 (HMM E-Value=2.4)                   28   3.6  
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)                 27   4.8  
SB_35040| Best HMM Match : fn3 (HMM E-Value=0.016)                     27   4.8  
SB_33056| Best HMM Match : DUF635 (HMM E-Value=8.7)                    27   4.8  
SB_28181| Best HMM Match : RVP (HMM E-Value=0.00058)                   27   4.8  
SB_35199| Best HMM Match : zf-CCHC (HMM E-Value=0.034)                 27   4.8  
SB_6803| Best HMM Match : 7tm_1 (HMM E-Value=4.3)                      27   8.3  

>SB_28292| Best HMM Match : RVT_1 (HMM E-Value=2.3e-38)
          Length = 469

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 94  TPLTRISNKLGRNVVTNFVRNHSNGGIPGENLPFDIHNRYKLTLY 228
           T LT+   ++ RNV+    + H    IPGE+    I N Y+L  Y
Sbjct: 36  TKLTKEEGEIQRNVIHERAKFHQRSQIPGESAESFIRNLYELAEY 80


>SB_55184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 31  KSNFCFLL*YLLENRRNVKMITPLTRISNKLGRNVVTNFVR 153
           K N CF++ + L  R ++++   L R   K  + VVTNF+R
Sbjct: 32  KLNECFVMDFGLTRRTDLELRIKLVRNMPKTCQTVVTNFIR 72


>SB_20701| Best HMM Match : DUF1027 (HMM E-Value=2.4)
          Length = 229

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 127 RNVVTNFVRNHSNGGIPGENLPFDIHNRYKLTLY 228
           RNV+    + H    IPGE+    I N Y+L  Y
Sbjct: 186 RNVIRERAKFHQRSQIPGESAESFIRNLYELAEY 219


>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
          Length = 1421

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -2

Query: 154 FSRNSLPHFYPVCLKCESVG*SSLRFY 74
           FSRNS P  +P    CE+   SSL FY
Sbjct: 281 FSRNSSPALFPASSMCEN---SSLSFY 304


>SB_35040| Best HMM Match : fn3 (HMM E-Value=0.016)
          Length = 442

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = -1

Query: 398 YNI*FILLIHNDS*CTVFY*LKPKTS 321
           +N  F+LL+++D  CTVF  L+P+++
Sbjct: 205 HNTLFVLLLNSDWNCTVFCRLRPRST 230


>SB_33056| Best HMM Match : DUF635 (HMM E-Value=8.7)
          Length = 189

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 127 RNVVTNFVRNHSNGGIPGENLPFDIHNRYKLTLY 228
           RNV+    + H    IPGE+    I N Y+L  Y
Sbjct: 129 RNVIHERAKFHQRSQIPGESAESFIRNLYELAEY 162


>SB_28181| Best HMM Match : RVP (HMM E-Value=0.00058)
          Length = 664

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 127 RNVVTNFVRNHSNGGIPGENLPFDIHNRYKLTLY 228
           RNV+    + H    IPGE+    I N Y+L  Y
Sbjct: 75  RNVIHERAKFHQRSQIPGESAESFIRNLYELAEY 108


>SB_35199| Best HMM Match : zf-CCHC (HMM E-Value=0.034)
          Length = 327

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 127 RNVVTNFVRNHSNGGIPGENLPFDIHNRYKLTLY 228
           RNV+    + H    IPGE+    I N Y+L  Y
Sbjct: 75  RNVIHERAKFHQRSQIPGESAESFIRNLYELAEY 108


>SB_6803| Best HMM Match : 7tm_1 (HMM E-Value=4.3)
          Length = 129

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -1

Query: 152 LTKFVTTFLPSLFEMRVSGVIIFTFL--RFSSRYHSKKQKFDFANSTVGIIK 3
           + KFV  ++  L  M +   +I TFL  R +   HSK  K +  N  + ++K
Sbjct: 2   MVKFVLLYIIPLVVMAILYTVILTFLWQRKTPGEHSKTNKRNMDNRKMRVLK 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,994,162
Number of Sequences: 59808
Number of extensions: 225407
Number of successful extensions: 438
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)