Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1096
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83107-7|CAB05501.2|  537|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z74034-2|CAE17843.1|  323|Caenorhabditis elegans Hypothetical pr...    27   5.5  

>Z83107-7|CAB05501.2|  537|Caenorhabditis elegans Hypothetical
           protein F32A7.6 protein.
          Length = 537

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 124 GRNVVTN-FVRNHSNGGIPGENLPFDIHNRYKLTLYFILYAGSG 252
           GRN   N FV    NGG+ G+N  +D +   + TL F +   SG
Sbjct: 264 GRNGKGNIFVWASGNGGVNGDNCAYDGYVSNEYTLSFGVIDASG 307


>Z74034-2|CAE17843.1|  323|Caenorhabditis elegans Hypothetical
           protein F43A11.4 protein.
          Length = 323

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 185 FSPGIPPLEWFLTKFVTTFLPSLFEMRVSGVIIFTFLR 72
           FSP   PL WF    +T  +  +F +  + +II +F+R
Sbjct: 3   FSPDADPLNWFAASVMT--INGVFGITCNTLIIASFIR 38


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,115,750
Number of Sequences: 27780
Number of extensions: 179109
Number of successful extensions: 354
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)