Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1096
         (419 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g50260.1 68414.m05635 C2 domain-containing protein low simila...    29   1.7  
At5g05170.1 68418.m00550 cellulose synthase, catalytic subunit (...    28   3.0  
At2g36270.1 68415.m04452 bZIP transcription factor family protei...    26   9.0  

>At1g50260.1 68414.m05635 C2 domain-containing protein low
           similarity to CLB1 [Lycopersicon esculentum] GI:2789434;
           contains Pfam profile PF00168: C2 domain
          Length = 675

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = -1

Query: 176 GIPPLEWFLTKFVTTFLPSLF 114
           GIP L  FLTK +T  LP LF
Sbjct: 344 GIPVLSMFLTKLLTVDLPRLF 364


>At5g05170.1 68418.m00550 cellulose synthase, catalytic subunit
           (Ath-B) nearly identical to gi:2827143, cellulose
           synthase, catalytic subunit (Ath-B)
          Length = 1065

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 158 WFLTKFVTTFLPSLFEMRVSGV 93
           WFL+ F++ F   + EMR SGV
Sbjct: 879 WFLSLFLSIFATGILEMRWSGV 900


>At2g36270.1 68415.m04452 bZIP transcription factor family protein /
           ABA-responsive element-binding protein, putative similar
           to ABA-responsive element binding protein 1 (AREB1)
           GI:9967417 from [Arabidopsis thaliana]; contains a bZIP
           transcription factor basic domain signature (PDOC00036)
          Length = 442

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
 Frame = +1

Query: 88  MITPLTRISNKLGRNVVTNFVRNHSNGGIPGENLPFDIHNR----YKLTL 225
           M+T  T+++++  R V ++  +   NGG  GEN PF    R    Y LTL
Sbjct: 1   MVTRETKLTSE--REVESSMAQARHNGGGGGENHPFTSLGRQSSIYSLTL 48


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,363,944
Number of Sequences: 28952
Number of extensions: 162015
Number of successful extensions: 337
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 337
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)