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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1095X
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...   101   5e-23
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...   100   9e-23
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    29   0.46 
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    28   0.80 
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    27   1.1  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    27   1.4  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   1.8  
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    27   1.8  
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   2.4  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   3.2  
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    25   4.3  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    25   5.6  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   5.6  
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    25   7.4  
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb...    24   9.8  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score =  101 bits (242), Expect = 5e-23
 Identities = 46/78 (58%), Positives = 55/78 (70%)
 Frame = +3

Query: 3   KSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQ 182
           K  KARG+ LR HFKN+ E A  I  M L++A  +L NV E K+ +PFRRFNGGVGR AQ
Sbjct: 13  KCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQ 72

Query: 183 AKQFGTTQGRWPKKSAEF 236
            K+FG TQ RWP KS +F
Sbjct: 73  GKEFGVTQARWPVKSVKF 90



 Score = 85.0 bits (201), Expect = 5e-18
 Identities = 36/70 (51%), Positives = 53/70 (75%)
 Frame = +2

Query: 245 VIEDAESNADNKTLDVDRLLIDHIQANRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSER 424
           ++++AE+NA+ K LD+D+L+I H+Q N AP  RRRTYRAHGR+  Y+SSP HIE+ ++E 
Sbjct: 94  LLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEE 153

Query: 425 ADAVARVAPT 454
            +AV +   T
Sbjct: 154 EEAVPKANDT 163


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score =  100 bits (240), Expect = 9e-23
 Identities = 46/78 (58%), Positives = 54/78 (69%)
 Frame = +3

Query: 3   KSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQ 182
           K  KARG+ LR HFKN+ E A  I  M L++A  +L NV E K+ +PFRRFNGGVGR AQ
Sbjct: 13  KCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQ 72

Query: 183 AKQFGTTQGRWPKKSAEF 236
            K+FG TQ RWP KS  F
Sbjct: 73  GKEFGVTQARWPVKSVNF 90



 Score = 85.0 bits (201), Expect = 5e-18
 Identities = 36/70 (51%), Positives = 53/70 (75%)
 Frame = +2

Query: 245 VIEDAESNADNKTLDVDRLLIDHIQANRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSER 424
           ++++AE+NA+ K LD+D+L+I H+Q N AP  RRRTYRAHGR+  Y+SSP HIE+ ++E 
Sbjct: 94  LLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEE 153

Query: 425 ADAVARVAPT 454
            +AV +   T
Sbjct: 154 EEAVPKANDT 163


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 28.7 bits (61), Expect = 0.46
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +1

Query: 295 QATYRPHSGKSRALPTQTYIPCSRS---HQPLHVVSLPHRSMS 414
           Q+ +   S K RA   +T +  ++S   HQ +H +S PH S S
Sbjct: 333 QSPFLKKSDKERANLNKTMVSINKSINIHQSIHEISCPHHSSS 375


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 27.9 bits (59), Expect = 0.80
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 191  VWHNTGSLAQEIRRIPLAVIEDAESNADN 277
            +WH T    QEIR  P    ++ E+ ADN
Sbjct: 1005 IWHETSYKMQEIRDNPECARQEMENIADN 1033


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 27  NLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEK-KECI 140
           NLRV  K T ++ +++   P  +  RYLK ++E  K+C+
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 194 WHNTGSLAQEIRRIPLAVIEDAESNADNKTLDVDRLLIDH 313
           +HN+G  +  +RR  ++ +E +E    NK +  D LL  H
Sbjct: 51  FHNSGIGSARLRRKNISFVEKSEQVKANKQVTADDLLEAH 90


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 204 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 121
           ++C TA+L+H D  RR   G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 276 LSAFDSASSITARGIRRISWASDPVLCQTALLEHS 172
           L +FD  SS+ A G   +     PV+ ++A +E S
Sbjct: 274 LDSFDDQSSVEASGWTEVGKNKKPVIARSATVERS 308


>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 325

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = -2

Query: 272 QRLIQRPQ*LQEEFGGFLGPATLCCAKLLCLSTATNAAVEATEWNTLFLFNHVFEVTNST 93
           QRLI + Q ++ +    LGP +L  A L  L+     +V +   +TL       ++ +S 
Sbjct: 236 QRLIHQIQAVETKLISILGPTSLSEAALPPLTDVQRTSVLSLLTSTLHSLESARQIADSN 295

Query: 92  TERHLSDC 69
           T + +  C
Sbjct: 296 TWKPIIVC 303


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 327 RFA*MWSISSLSTSKVLLSAFDSASSITARGIRRISWA 214
           R+  +W++S+L  + VL+  FD    I    ++ I W+
Sbjct: 851 RYVLVWAVSNLILAIVLIQVFDGMRFINNGYMKYIFWS 888


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 260 ESNADNKTLDVDRLLIDHIQA--NRAPCLRRRTYRAHGRINPYMSSPCHIEVC 412
           E+ +   +L+ DRLLID+ Q     +P +         +I+ Y+S  CH  +C
Sbjct: 537 ETKSGKPSLEFDRLLIDYTQTCQELSPVMSACYLIPMCKIDKYISM-CHKSLC 588


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -2

Query: 140 NTLFLFNHVFEVTNSTTERHLSDCHCGL-IC 51
           N   L    F V +  T + ++DC CGL +C
Sbjct: 204 NLGILLKKEFRVRHMKTPQQINDCDCGLHVC 234


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 24  SNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKK 131
           +N ++  K+  ETA A+RKM  +  +R L+ + ++K
Sbjct: 73  TNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQK 108


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 179 SSKAVWHNTGSLAQEIRRIPLAVIEDAES 265
           S++A  HN GS+ Q I  +     EDA+S
Sbjct: 46  STEAAKHNKGSIKQVIGAVVDCQFEDADS 74


>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 710

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -1

Query: 309 SISSLSTSKVLLSAFDSASSITARGIRRISW 217
           S++  +T+ V  S  DS   IT RGI+RIS+
Sbjct: 286 SLAKRATTTVTTSTSDS---ITLRGIKRISY 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,900,894
Number of Sequences: 5004
Number of extensions: 36166
Number of successful extensions: 102
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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