BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1095X (462 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc... 101 5e-23 SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch... 100 9e-23 SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 29 0.46 SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 28 0.80 SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 27 1.1 SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 27 1.4 SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 1.8 SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 27 1.8 SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 2.4 SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 26 3.2 SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce... 25 4.3 SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 25 5.6 SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 5.6 SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 25 7.4 SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 24 9.8 >SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Schizosaccharomyces pombe|chr 2|||Manual Length = 187 Score = 101 bits (242), Expect = 5e-23 Identities = 46/78 (58%), Positives = 55/78 (70%) Frame = +3 Query: 3 KSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQ 182 K KARG+ LR HFKN+ E A I M L++A +L NV E K+ +PFRRFNGGVGR AQ Sbjct: 13 KCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQ 72 Query: 183 AKQFGTTQGRWPKKSAEF 236 K+FG TQ RWP KS +F Sbjct: 73 GKEFGVTQARWPVKSVKF 90 Score = 85.0 bits (201), Expect = 5e-18 Identities = 36/70 (51%), Positives = 53/70 (75%) Frame = +2 Query: 245 VIEDAESNADNKTLDVDRLLIDHIQANRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSER 424 ++++AE+NA+ K LD+D+L+I H+Q N AP RRRTYRAHGR+ Y+SSP HIE+ ++E Sbjct: 94 LLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEE 153 Query: 425 ADAVARVAPT 454 +AV + T Sbjct: 154 EEAVPKANDT 163 >SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Schizosaccharomyces pombe|chr 3|||Manual Length = 187 Score = 100 bits (240), Expect = 9e-23 Identities = 46/78 (58%), Positives = 54/78 (69%) Frame = +3 Query: 3 KSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQ 182 K KARG+ LR HFKN+ E A I M L++A +L NV E K+ +PFRRFNGGVGR AQ Sbjct: 13 KCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQ 72 Query: 183 AKQFGTTQGRWPKKSAEF 236 K+FG TQ RWP KS F Sbjct: 73 GKEFGVTQARWPVKSVNF 90 Score = 85.0 bits (201), Expect = 5e-18 Identities = 36/70 (51%), Positives = 53/70 (75%) Frame = +2 Query: 245 VIEDAESNADNKTLDVDRLLIDHIQANRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSER 424 ++++AE+NA+ K LD+D+L+I H+Q N AP RRRTYRAHGR+ Y+SSP HIE+ ++E Sbjct: 94 LLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEE 153 Query: 425 ADAVARVAPT 454 +AV + T Sbjct: 154 EEAVPKANDT 163 >SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces pombe|chr 2|||Manual Length = 681 Score = 28.7 bits (61), Expect = 0.46 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Frame = +1 Query: 295 QATYRPHSGKSRALPTQTYIPCSRS---HQPLHVVSLPHRSMS 414 Q+ + S K RA +T + ++S HQ +H +S PH S S Sbjct: 333 QSPFLKKSDKERANLNKTMVSINKSINIHQSIHEISCPHHSSS 375 >SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase Ade3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1323 Score = 27.9 bits (59), Expect = 0.80 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +2 Query: 191 VWHNTGSLAQEIRRIPLAVIEDAESNADN 277 +WH T QEIR P ++ E+ ADN Sbjct: 1005 IWHETSYKMQEIRDNPECARQEMENIADN 1033 >SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosaccharomyces pombe|chr 1|||Manual Length = 941 Score = 27.5 bits (58), Expect = 1.1 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%) Frame = +3 Query: 27 NLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEK-KECI 140 NLRV K T ++ +++ P + RYLK ++E K+C+ Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140 >SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces pombe|chr 1|||Manual Length = 797 Score = 27.1 bits (57), Expect = 1.4 Identities = 13/40 (32%), Positives = 22/40 (55%) Frame = +2 Query: 194 WHNTGSLAQEIRRIPLAVIEDAESNADNKTLDVDRLLIDH 313 +HN+G + +RR ++ +E +E NK + D LL H Sbjct: 51 FHNSGIGSARLRRKNISFVEKSEQVKANKQVTADDLLEAH 90 >SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1958 Score = 26.6 bits (56), Expect = 1.8 Identities = 11/28 (39%), Positives = 18/28 (64%) Frame = -1 Query: 204 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 121 ++C TA+L+H D RR G+ + L F+ Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873 >SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosaccharomyces pombe|chr 2|||Manual Length = 512 Score = 26.6 bits (56), Expect = 1.8 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = -1 Query: 276 LSAFDSASSITARGIRRISWASDPVLCQTALLEHS 172 L +FD SS+ A G + PV+ ++A +E S Sbjct: 274 LDSFDDQSSVEASGWTEVGKNKKPVIARSATVERS 308 >SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 325 Score = 26.2 bits (55), Expect = 2.4 Identities = 18/68 (26%), Positives = 32/68 (47%) Frame = -2 Query: 272 QRLIQRPQ*LQEEFGGFLGPATLCCAKLLCLSTATNAAVEATEWNTLFLFNHVFEVTNST 93 QRLI + Q ++ + LGP +L A L L+ +V + +TL ++ +S Sbjct: 236 QRLIHQIQAVETKLISILGPTSLSEAALPPLTDVQRTSVLSLLTSTLHSLESARQIADSN 295 Query: 92 TERHLSDC 69 T + + C Sbjct: 296 TWKPIIVC 303 >SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schizosaccharomyces pombe|chr 2|||Manual Length = 926 Score = 25.8 bits (54), Expect = 3.2 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = -1 Query: 327 RFA*MWSISSLSTSKVLLSAFDSASSITARGIRRISWA 214 R+ +W++S+L + VL+ FD I ++ I W+ Sbjct: 851 RYVLVWAVSNLILAIVLIQVFDGMRFINNGYMKYIFWS 888 >SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces pombe|chr 3|||Manual Length = 851 Score = 25.4 bits (53), Expect = 4.3 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%) Frame = +2 Query: 260 ESNADNKTLDVDRLLIDHIQA--NRAPCLRRRTYRAHGRINPYMSSPCHIEVC 412 E+ + +L+ DRLLID+ Q +P + +I+ Y+S CH +C Sbjct: 537 ETKSGKPSLEFDRLLIDYTQTCQELSPVMSACYLIPMCKIDKYISM-CHKSLC 588 >SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces pombe|chr 2|||Manual Length = 415 Score = 25.0 bits (52), Expect = 5.6 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%) Frame = -2 Query: 140 NTLFLFNHVFEVTNSTTERHLSDCHCGL-IC 51 N L F V + T + ++DC CGL +C Sbjct: 204 NLGILLKKEFRVRHMKTPQQINDCDCGLHVC 234 >SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 240 Score = 25.0 bits (52), Expect = 5.6 Identities = 12/36 (33%), Positives = 23/36 (63%) Frame = +3 Query: 24 SNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKK 131 +N ++ K+ ETA A+RKM + +R L+ + ++K Sbjct: 73 TNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQK 108 >SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces pombe|chr 1|||Manual Length = 525 Score = 24.6 bits (51), Expect = 7.4 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +2 Query: 179 SSKAVWHNTGSLAQEIRRIPLAVIEDAES 265 S++A HN GS+ Q I + EDA+S Sbjct: 46 STEAAKHNKGSIKQVIGAVVDCQFEDADS 74 >SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pombe|chr 1|||Manual Length = 710 Score = 24.2 bits (50), Expect = 9.8 Identities = 14/31 (45%), Positives = 20/31 (64%) Frame = -1 Query: 309 SISSLSTSKVLLSAFDSASSITARGIRRISW 217 S++ +T+ V S DS IT RGI+RIS+ Sbjct: 286 SLAKRATTTVTTSTSDS---ITLRGIKRISY 313 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,900,894 Number of Sequences: 5004 Number of extensions: 36166 Number of successful extensions: 102 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 96 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 102 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 174340060 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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