Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1095X
(462 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc... 101 5e-23
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch... 100 9e-23
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 29 0.46
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 28 0.80
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 27 1.1
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 27 1.4
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 27 1.8
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 27 1.8
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 2.4
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 26 3.2
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce... 25 4.3
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce... 25 5.6
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 5.6
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 25 7.4
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 24 9.8
>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 101 bits (242), Expect = 5e-23
Identities = 46/78 (58%), Positives = 55/78 (70%)
Frame = +3
Query: 3 KSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQ 182
K KARG+ LR HFKN+ E A I M L++A +L NV E K+ +PFRRFNGGVGR AQ
Sbjct: 13 KCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQ 72
Query: 183 AKQFGTTQGRWPKKSAEF 236
K+FG TQ RWP KS +F
Sbjct: 73 GKEFGVTQARWPVKSVKF 90
Score = 85.0 bits (201), Expect = 5e-18
Identities = 36/70 (51%), Positives = 53/70 (75%)
Frame = +2
Query: 245 VIEDAESNADNKTLDVDRLLIDHIQANRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSER 424
++++AE+NA+ K LD+D+L+I H+Q N AP RRRTYRAHGR+ Y+SSP HIE+ ++E
Sbjct: 94 LLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEE 153
Query: 425 ADAVARVAPT 454
+AV + T
Sbjct: 154 EEAVPKANDT 163
>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
L17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 187
Score = 100 bits (240), Expect = 9e-23
Identities = 46/78 (58%), Positives = 54/78 (69%)
Frame = +3
Query: 3 KSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQ 182
K KARG+ LR HFKN+ E A I M L++A +L NV E K+ +PFRRFNGGVGR AQ
Sbjct: 13 KCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQ 72
Query: 183 AKQFGTTQGRWPKKSAEF 236
K+FG TQ RWP KS F
Sbjct: 73 GKEFGVTQARWPVKSVNF 90
Score = 85.0 bits (201), Expect = 5e-18
Identities = 36/70 (51%), Positives = 53/70 (75%)
Frame = +2
Query: 245 VIEDAESNADNKTLDVDRLLIDHIQANRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSER 424
++++AE+NA+ K LD+D+L+I H+Q N AP RRRTYRAHGR+ Y+SSP HIE+ ++E
Sbjct: 94 LLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVAEE 153
Query: 425 ADAVARVAPT 454
+AV + T
Sbjct: 154 EEAVPKANDT 163
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 28.7 bits (61), Expect = 0.46
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Frame = +1
Query: 295 QATYRPHSGKSRALPTQTYIPCSRS---HQPLHVVSLPHRSMS 414
Q+ + S K RA +T + ++S HQ +H +S PH S S
Sbjct: 333 QSPFLKKSDKERANLNKTMVSINKSINIHQSIHEISCPHHSSS 375
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 27.9 bits (59), Expect = 0.80
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 191 VWHNTGSLAQEIRRIPLAVIEDAESNADN 277
+WH T QEIR P ++ E+ ADN
Sbjct: 1005 IWHETSYKMQEIRDNPECARQEMENIADN 1033
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 27.5 bits (58), Expect = 1.1
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 27 NLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEK-KECI 140
NLRV K T ++ +++ P + RYLK ++E K+C+
Sbjct: 102 NLRVSKKKTSKSDVSMAGFPFFKLDRYLKILVEDLKKCV 140
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 27.1 bits (57), Expect = 1.4
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +2
Query: 194 WHNTGSLAQEIRRIPLAVIEDAESNADNKTLDVDRLLIDH 313
+HN+G + +RR ++ +E +E NK + D LL H
Sbjct: 51 FHNSGIGSARLRRKNISFVEKSEQVKANKQVTADDLLEAH 90
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 204 VLCQTALLEHSDQRRR*SDGMEYTLSFQ 121
++C TA+L+H D RR G+ + L F+
Sbjct: 846 IVCNTAVLDHWDITRRIEYGIAHILCFR 873
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 26.6 bits (56), Expect = 1.8
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 276 LSAFDSASSITARGIRRISWASDPVLCQTALLEHS 172
L +FD SS+ A G + PV+ ++A +E S
Sbjct: 274 LDSFDDQSSVEASGWTEVGKNKKPVIARSATVERS 308
>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 325
Score = 26.2 bits (55), Expect = 2.4
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = -2
Query: 272 QRLIQRPQ*LQEEFGGFLGPATLCCAKLLCLSTATNAAVEATEWNTLFLFNHVFEVTNST 93
QRLI + Q ++ + LGP +L A L L+ +V + +TL ++ +S
Sbjct: 236 QRLIHQIQAVETKLISILGPTSLSEAALPPLTDVQRTSVLSLLTSTLHSLESARQIADSN 295
Query: 92 TERHLSDC 69
T + + C
Sbjct: 296 TWKPIIVC 303
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 3.2
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -1
Query: 327 RFA*MWSISSLSTSKVLLSAFDSASSITARGIRRISWA 214
R+ +W++S+L + VL+ FD I ++ I W+
Sbjct: 851 RYVLVWAVSNLILAIVLIQVFDGMRFINNGYMKYIFWS 888
>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 851
Score = 25.4 bits (53), Expect = 4.3
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +2
Query: 260 ESNADNKTLDVDRLLIDHIQA--NRAPCLRRRTYRAHGRINPYMSSPCHIEVC 412
E+ + +L+ DRLLID+ Q +P + +I+ Y+S CH +C
Sbjct: 537 ETKSGKPSLEFDRLLIDYTQTCQELSPVMSACYLIPMCKIDKYISM-CHKSLC 588
>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 415
Score = 25.0 bits (52), Expect = 5.6
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = -2
Query: 140 NTLFLFNHVFEVTNSTTERHLSDCHCGL-IC 51
N L F V + T + ++DC CGL +C
Sbjct: 204 NLGILLKKEFRVRHMKTPQQINDCDCGLHVC 234
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 5.6
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 24 SNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKK 131
+N ++ K+ ETA A+RKM + +R L+ + ++K
Sbjct: 73 TNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQK 108
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 24.6 bits (51), Expect = 7.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 179 SSKAVWHNTGSLAQEIRRIPLAVIEDAES 265
S++A HN GS+ Q I + EDA+S
Sbjct: 46 STEAAKHNKGSIKQVIGAVVDCQFEDADS 74
>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 710
Score = 24.2 bits (50), Expect = 9.8
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 309 SISSLSTSKVLLSAFDSASSITARGIRRISW 217
S++ +T+ V S DS IT RGI+RIS+
Sbjct: 286 SLAKRATTTVTTSTSDS---ITLRGIKRISY 313
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,900,894
Number of Sequences: 5004
Number of extensions: 36166
Number of successful extensions: 102
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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