Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1095X
(462 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 105 2e-23
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 100 1e-21
03_02_0348 + 7709894-7709926,7710516-7710604,7711202-7711277,771... 31 0.45
04_03_0311 - 14216616-14217032 27 5.6
12_01_0321 + 2447726-2447790,2448114-2448320,2449259-2449392,244... 27 7.3
09_02_0608 + 11194889-11195134,11195185-11195406 27 7.3
07_03_1649 - 28385289-28385358,28387039-28387877 27 7.3
06_02_0215 - 13145544-13146482,13148797-13149297 27 7.3
06_01_1168 - 9949128-9950621 27 7.3
02_02_0300 - 8746526-8747224,8749033-8749089,8749414-8749650,875... 27 7.3
11_01_0485 + 3728686-3728863,3729933-3730095,3730508-3730549,373... 27 9.7
09_06_0087 + 20771329-20771450,20771462-20771771,20771893-207726... 27 9.7
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970... 27 9.7
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 105 bits (251), Expect = 2e-23
Identities = 52/79 (65%), Positives = 60/79 (75%), Gaps = 1/79 (1%)
Frame = +3
Query: 3 KSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQ 182
KS KA G +LRVHFKNT ETA AIRK+PL +A RYL++VI K+ IPFRR+ GGVGR AQ
Sbjct: 13 KSSKAMGRDLRVHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQ 72
Query: 183 AK-QFGTTQGRWPKKSAEF 236
AK + QGRWP KSA F
Sbjct: 73 AKSRHSNGQGRWPAKSARF 91
Score = 95.1 bits (226), Expect = 2e-20
Identities = 44/71 (61%), Positives = 55/71 (77%)
Frame = +2
Query: 230 RIPLAVIEDAESNADNKTLDVDRLLIDHIQANRAPCLRRRTYRAHGRINPYMSSPCHIEV 409
R L ++++AESNA+ K LDVD L + HIQ N+A RRRTYRAHGRINPYMSSPCHIE+
Sbjct: 90 RFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 149
Query: 410 CLSERADAVAR 442
LSE+ + V +
Sbjct: 150 ILSEKEEPVKK 160
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 99.5 bits (237), Expect = 1e-21
Identities = 46/75 (61%), Positives = 57/75 (76%)
Frame = +2
Query: 230 RIPLAVIEDAESNADNKTLDVDRLLIDHIQANRAPCLRRRTYRAHGRINPYMSSPCHIEV 409
R L ++++AESNAD K LDVD L + HIQ N+A RRRTYRAHGRINPYMSSPCH+E+
Sbjct: 102 RFILDLLKNAESNADVKGLDVDNLFVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHVEL 161
Query: 410 CLSERADAVARVAPT 454
LSE+ +AV + T
Sbjct: 162 ILSEKEEAVKKEPET 176
Score = 88.6 bits (210), Expect = 2e-18
Identities = 50/91 (54%), Positives = 59/91 (64%), Gaps = 13/91 (14%)
Frame = +3
Query: 3 KSCKARGSNLRVHFK------------NTYETAMAIRKMPLRRAVRYLKNVIEKKECIPF 146
KS KA G +LRVHFK NT ETA A+RK+PL +A RYL++VI K+ IPF
Sbjct: 13 KSAKAMGRDLRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYLEDVIAHKQAIPF 72
Query: 147 RRFNGGVGRCAQAK-QFGTTQGRWPKKSAEF 236
RR+ GGVGR AQ K + QGRWP KSA F
Sbjct: 73 RRYCGGVGRTAQVKSRQSNGQGRWPAKSARF 103
>03_02_0348 +
7709894-7709926,7710516-7710604,7711202-7711277,
7712019-7712214,7712449-7712832,7712884-7714804,
7714906-7714966,7715952-7716371
Length = 1059
Score = 31.1 bits (67), Expect = 0.45
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +2
Query: 152 LQRRRWSLCSSKAVWHNTGSLAQEIRRIPLAVIEDAESNADNKT 283
LQ R SL S++ +N G++ IR I + ++A+S+ D+KT
Sbjct: 569 LQSRISSLLDSESPQNNAGNILDSIRNILKDIEDEADSSNDSKT 612
>04_03_0311 - 14216616-14217032
Length = 138
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Frame = -1
Query: 339 RQGARFA*MWSISSLSTSKV-LLSAFDSASSITARG 235
RQG+ F+ + ++SLS++ V LL+A S+S++ A G
Sbjct: 31 RQGSGFSRLLLVASLSSAAVPLLAASSSSSAVAAPG 66
>12_01_0321 +
2447726-2447790,2448114-2448320,2449259-2449392,
2449481-2449668,2450204-2450359
Length = 249
Score = 27.1 bits (57), Expect = 7.3
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +1
Query: 313 HSGKSRALPTQT-YIPCSRSHQPLHVVSLPHRSMSQ 417
HSG R+ P+ T P P HV S PHR Q
Sbjct: 8 HSGLPRSPPSATGRQPYEAQFGPFHVPSRPHRGPDQ 43
>09_02_0608 + 11194889-11195134,11195185-11195406
Length = 155
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 327 ARPAYADVHTVLTVASTPTCRLPATS 404
AR A +D+ T+L + + P RLP TS
Sbjct: 24 ARRALSDLQTILGLGAAPPQRLPQTS 49
>07_03_1649 - 28385289-28385358,28387039-28387877
Length = 302
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +2
Query: 359 AHGRINPYMSSPCHIEVCLSERADAVARVAPT 454
AHG INPY+ + S + D V + T
Sbjct: 18 AHGHINPYLELATRLTTTSSSQIDVVVHLVST 49
>06_02_0215 - 13145544-13146482,13148797-13149297
Length = 479
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +2
Query: 131 RVYSIPSLQRRRWSL--CSSKAVWHNTGSLAQEIRRIPLAVIED 256
R ++P+ QR+RW L A H+ G + ++++ L + ED
Sbjct: 114 RPSALPAAQRKRWMLQVLEGVAACHSAGVVHRDLKPANLLISED 157
>06_01_1168 - 9949128-9950621
Length = 497
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 345 LRRQGARFA*MWSISSLSTSKVLLSAFDSASSITARGIRRISWA 214
L R A F +W++ S + +L F+ S+ + RG I WA
Sbjct: 318 LERTSAAF--VWAVGSSHATLLLPEGFEERSTASGRGTVIIGWA 359
>02_02_0300 -
8746526-8747224,8749033-8749089,8749414-8749650,
8750061-8750172,8750258-8750538,8752032-8752244,
8753105-8753636,8753871-8753899
Length = 719
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +2
Query: 128 ERVYSIPSLQRRRWSLCSSKAVWHN------TGSLAQEIRRIPLAVIEDAESN 268
+ + S Q R W+ C +A WH +L ++ +R+ A++ D S+
Sbjct: 615 QHTFRFYSQQWRTWAACFIQAAWHRYCRKKLEDTLFEKEKRLQAAIVSDGSSS 667
>11_01_0485 +
3728686-3728863,3729933-3730095,3730508-3730549,
3730833-3730927,3731273-3731334,3731416-3731507,
3731587-3731722,3731818-3731904,3732430-3732519,
3732969-3733071,3733616-3733716,3733837-3733971,
3734006-3734093,3734484-3734544,3734626-3734689,
3735219-3735347
Length = 541
Score = 26.6 bits (56), Expect = 9.7
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 191 VWHNTGSLAQEIRRIPLAVIEDAESNADNKTLDVDRLLIDHIQA 322
V H T Q+ + A+I + DNK LD RL ++H+ A
Sbjct: 426 VSHITERCIQQSGKALQAIISEWIVKFDNKELDRSRLQLNHVDA 469
>09_06_0087 +
20771329-20771450,20771462-20771771,20771893-20772672,
20772854-20774002
Length = 786
Score = 26.6 bits (56), Expect = 9.7
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Frame = +2
Query: 125 KERVYSIPSLQRRRWSLCSSKAVWH-NTGSLAQEIRRIPLAVIEDAESNADNKTLDVDRL 301
K R+ RR L + H ++ S AQ + L V+ED ++K D D
Sbjct: 697 KRRIEPYSHTPRRSERLAAINGGRHQHSVSKAQRVLMKKLRVVED-----ESKVEDTD-- 749
Query: 302 LIDHIQANRAPCLRRRTYRAHGRINPYMSSPCHIEVC 412
++ +++ ++P + N +SSP +EVC
Sbjct: 750 ILKYLELFKSPLVPAHVQALAALCNVRLSSPQSVEVC 786
>03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,
9700145-9700235,9700698-9700759,9701256-9702962,
9703789-9703870,9703972-9704057,9704855-9704968,
9705113-9705163,9705261-9705358,9707084-9707546
Length = 1367
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 340 TQTYIPCSRSHQPLHVVSLPHRSMSQRTRR 429
T +PCSR +P+HV S S SQ +R
Sbjct: 1227 THGTLPCSRDDEPVHVPSDFGSSKSQDNQR 1256
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,318,023
Number of Sequences: 37544
Number of extensions: 268167
Number of successful extensions: 709
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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