Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1095X
         (462 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)              115   2e-26
SB_6760| Best HMM Match : HEAT (HMM E-Value=9e-06)                     27   5.7  
SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   10.0 
SB_6965| Best HMM Match : EB (HMM E-Value=1.3)                         27   10.0 
SB_6041| Best HMM Match : UBX (HMM E-Value=1)                          27   10.0 
SB_5211| Best HMM Match : 7tm_1 (HMM E-Value=0.015)                    27   10.0 

>SB_48345| Best HMM Match : Ribosomal_L22 (HMM E-Value=0)
          Length = 142

 Score =  115 bits (276), Expect = 2e-26
 Identities = 54/79 (68%), Positives = 65/79 (82%), Gaps = 2/79 (2%)
 Frame = +3

Query: 3   KSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQ 182
           KSCKARGSNLRVH+KNT+E AMAI+ M +R+A RYLK+V  KK+ +PFR++NGGVGR AQ
Sbjct: 13  KSCKARGSNLRVHYKNTHEAAMAIKGMHVRKANRYLKDVCAKKQLVPFRKYNGGVGRKAQ 72

Query: 183 AKQFGT--TQGRWPKKSAE 233
           AK      +QGRWPKKSAE
Sbjct: 73  AKNLKVPGSQGRWPKKSAE 91



 Score = 70.1 bits (164), Expect = 8e-13
 Identities = 32/57 (56%), Positives = 43/57 (75%)
 Frame = +2

Query: 206 GSLAQEIRRIPLAVIEDAESNADNKTLDVDRLLIDHIQANRAPCLRRRTYRAHGRIN 376
           G   ++   I L ++++AESNA+ K LDVD L+++HIQ N AP +RRRTYRAHGRIN
Sbjct: 83  GRWPKKSAEILLQLLKNAESNAEFKGLDVDSLVVEHIQVNEAPSMRRRTYRAHGRIN 139


>SB_6760| Best HMM Match : HEAT (HMM E-Value=9e-06)
          Length = 120

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -2

Query: 128 LFNHVFEVTNSTTERHLSDCHCGLICVLKVNTEV*TTRFA 9
           L +H+ +V+++       D   GL+C L ++ E+  T+FA
Sbjct: 6   LLDHLLDVSSAYLAEEALDMPIGLVCRLVLSDEMFVTQFA 45


>SB_21495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1418

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 203  CCAKLLCLSTATNAAVEATEWNTLFLFNHVFEVTNSTTERHL 78
            CC  +  +ST  N+ V +  W+       VFE  ++T E +L
Sbjct: 1374 CCTCVTVVSTPDNSVVVSRTWDVRKSSAFVFEERSTTRELNL 1415


>SB_6965| Best HMM Match : EB (HMM E-Value=1.3)
          Length = 514

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 95  CCSLPQKRD*KERVYSIPSLQRRRWSLCSSKAVW 196
           CC LP++    +R+ ++ SLQR+  ++ S + V+
Sbjct: 437 CCPLPKRLSCTDRIRAVASLQRKFETMQSLENVY 470


>SB_6041| Best HMM Match : UBX (HMM E-Value=1)
          Length = 651

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +2

Query: 95  CCSLPQKRD*KERVYSIPSLQRRRWSLCSSKAVW 196
           CC LP++    +R+ ++ SLQR+  ++ S + V+
Sbjct: 345 CCPLPKRLSCTDRIRAVASLQRKFETMQSLENVY 378


>SB_5211| Best HMM Match : 7tm_1 (HMM E-Value=0.015)
          Length = 728

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 14/59 (23%), Positives = 27/59 (45%)
 Frame = +2

Query: 224 IRRIPLAVIEDAESNADNKTLDVDRLLIDHIQANRAPCLRRRTYRAHGRINPYMSSPCH 400
           + R PL  +ED   N  +  + +   +   + A R P + +R+Y +    +P  +  CH
Sbjct: 656 LHRSPLTSVEDIRINVASDLIQISSAVSSALGAFRRPLIGKRSYGS----SPLRNGFCH 710


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,325,402
Number of Sequences: 59808
Number of extensions: 310102
Number of successful extensions: 874
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)