Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1095X
         (462 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   125   1e-29
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   103   5e-23
Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical pr...    29   1.2  
U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical pr...    29   2.1  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  125 bits (302), Expect = 1e-29
 Identities = 56/78 (71%), Positives = 66/78 (84%)
 Frame = +3

Query: 3   KSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQ 182
           KSCKARGS+LRVHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF+GG+GR AQ
Sbjct: 15  KSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQ 74

Query: 183 AKQFGTTQGRWPKKSAEF 236
            KQ+ TTQGRWP KSA+F
Sbjct: 75  TKQWNTTQGRWPVKSADF 92



 Score =  103 bits (248), Expect = 5e-23
 Identities = 49/74 (66%), Positives = 60/74 (81%)
 Frame = +2

Query: 239 LAVIEDAESNADNKTLDVDRLLIDHIQANRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 418
           L ++++AESNA+ K LDVD L+I+HI   RA  LRRRTYRAHGRINPYMSSPCHIEV L+
Sbjct: 94  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 153

Query: 419 ERADAVARVAPTDD 460
           E+ D V++  PTDD
Sbjct: 154 EKEDVVSK--PTDD 165


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  103 bits (248), Expect = 5e-23
 Identities = 49/74 (66%), Positives = 60/74 (81%)
 Frame = +2

Query: 239 LAVIEDAESNADNKTLDVDRLLIDHIQANRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 418
           L ++++AESNA+ K LDVD L+I+HI   RA  LRRRTYRAHGRINPYMSSPCHIEV L+
Sbjct: 66  LDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 125

Query: 419 ERADAVARVAPTDD 460
           E+ D V++  PTDD
Sbjct: 126 EKEDVVSK--PTDD 137



 Score = 81.4 bits (192), Expect = 3e-16
 Identities = 37/51 (72%), Positives = 43/51 (84%)
 Frame = +3

Query: 3   KSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRF 155
           KSCKARGS+LRVHFKNT+E AMA+R MPLRRA  +L +V E KE +PFRRF
Sbjct: 15  KSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65


>Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical
           protein C27A7.9 protein.
          Length = 95

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = -2

Query: 401 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*VACQRPKFCC 273
           CG +T  R  C  +    +C G   +L  C   V     K CC
Sbjct: 40  CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81


>U41028-4|AAA82357.1|  455|Caenorhabditis elegans Hypothetical
           protein C25G6.5 protein.
          Length = 455

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 161 AVEATEWNTLFLFN--HVFEVTNSTTERHLSDCHCGLICVLKVN 36
           AV A  W  L +F+  + FE+ NS +    S CHC  +C   +N
Sbjct: 278 AVFAVAWLPLNVFHIFNTFELVNSFSVTTFSICHCLAMCSACLN 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,917,019
Number of Sequences: 27780
Number of extensions: 221196
Number of successful extensions: 647
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)