Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1095X
         (462 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) simi...   108   2e-24
At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) simi...   108   2e-24
At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1...    29   2.0  
At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1...    29   2.0  
At2g40550.1 68415.m05003 expressed protein                             29   2.0  
At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein ...    28   2.7  
At4g35270.1 68417.m05012 RWP-RK domain-containing protein simila...    27   4.7  
At5g33320.1 68418.m03955 triose phosphate/phosphate translocator...    27   6.2  

>At1g67430.1 68414.m07675 60S ribosomal protein L17 (RPL17B) similar
           to ribosomal protein GI:19101 from [Hordeum vulgare]
          Length = 175

 Score =  108 bits (260), Expect = 2e-24
 Identities = 54/79 (68%), Positives = 62/79 (78%), Gaps = 1/79 (1%)
 Frame = +3

Query: 3   KSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQ 182
           KSCKARGS+LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPF RF  GVGR AQ
Sbjct: 13  KSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQ 72

Query: 183 AK-QFGTTQGRWPKKSAEF 236
           AK +    QGRWP KSA+F
Sbjct: 73  AKNRHSNGQGRWPAKSAQF 91



 Score = 94.3 bits (224), Expect = 4e-20
 Identities = 44/72 (61%), Positives = 55/72 (76%)
 Frame = +2

Query: 239 LAVIEDAESNADNKTLDVDRLLIDHIQANRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 418
           L ++++AESNA+ K LDVD L I HIQ N+A   RRRTYRAHGRINPYMS+PCHIE+ LS
Sbjct: 93  LDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILS 152

Query: 419 ERADAVARVAPT 454
           E+ + V +   T
Sbjct: 153 EKEEPVKKEPET 164


>At1g27400.1 68414.m03340 60S ribosomal protein L17 (RPL17A) similar
           to GB:P51413 from [Arabidopsis thaliana]; similar to
           ESTs gb|L33542 and gb|AA660016
          Length = 176

 Score =  108 bits (260), Expect = 2e-24
 Identities = 53/79 (67%), Positives = 62/79 (78%), Gaps = 1/79 (1%)
 Frame = +3

Query: 3   KSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQ 182
           KSCKARG++LRVHFKNT ETA AIRK+PL +A RYL++VI  K+ IPF RF  GVGR AQ
Sbjct: 13  KSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQ 72

Query: 183 AK-QFGTTQGRWPKKSAEF 236
           AK +    QGRWP KSA+F
Sbjct: 73  AKNRHSNGQGRWPAKSAQF 91



 Score = 94.3 bits (224), Expect = 4e-20
 Identities = 44/72 (61%), Positives = 55/72 (76%)
 Frame = +2

Query: 239 LAVIEDAESNADNKTLDVDRLLIDHIQANRAPCLRRRTYRAHGRINPYMSSPCHIEVCLS 418
           L ++++AESNA+ K LDVD L I HIQ N+A   RRRTYRAHGRINPYMS+PCHIE+ LS
Sbjct: 93  LDLLKNAESNAEVKGLDVDALFISHIQVNQAAKQRRRTYRAHGRINPYMSNPCHIELILS 152

Query: 419 ERADAVARVAPT 454
           E+ + V +   T
Sbjct: 153 EKEEPVKKEPET 164


>At3g18100.2 68416.m02302 myb family transcription factor (MYB4R1)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 634

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = +2

Query: 149 SLQRRRWSLCSSKAVWHNTGSLAQEIRRIPLAVIEDAESNADNKTLDVDRL 301
           S++RR+WS   +K +      L QE+++I L+   +  S+ +  T D+D +
Sbjct: 132 SVKRRKWSTEENKNL---AKGLKQEVQKILLSEAIERSSDLEGATYDIDTI 179


>At3g18100.1 68416.m02301 myb family transcription factor (MYB4R1)
           contains Pfam profile: PF00249 Myb-like DNA-binding
           domain
          Length = 847

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = +2

Query: 149 SLQRRRWSLCSSKAVWHNTGSLAQEIRRIPLAVIEDAESNADNKTLDVDRL 301
           S++RR+WS   +K +      L QE+++I L+   +  S+ +  T D+D +
Sbjct: 345 SVKRRKWSTEENKNL---AKGLKQEVQKILLSEAIERSSDLEGATYDIDTI 392


>At2g40550.1 68415.m05003 expressed protein
          Length = 589

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/55 (25%), Positives = 28/55 (50%)
 Frame = +2

Query: 134 VYSIPSLQRRRWSLCSSKAVWHNTGSLAQEIRRIPLAVIEDAESNADNKTLDVDR 298
           +Y +P   + +W+ CSS+ + +    L  + R   + V E+   + D+ TL+  R
Sbjct: 126 LYCVPVPGKNQWTECSSQELKNRFLDLTGQNREKRVRVDEEMTDSMDSSTLEAGR 180


>At5g66270.1 68418.m08356 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 449

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 228 RISWASDPVLCQTALLEHSD 169
           R+SWASD +LCQ  L    D
Sbjct: 9   RVSWASDSMLCQVKLFLSDD 28


>At4g35270.1 68417.m05012 RWP-RK domain-containing protein similar
           to nodule inception protein GI:6448579 from (Lotus
           japonicus); contains Pfam profile: PF02042 RWP-RK domain
          Length = 974

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 196 AQHRVAGPRNPPNSSCSY 249
           AQ   A P++PP+SSCS+
Sbjct: 765 AQGTAAAPKSPPSSSCSH 782


>At5g33320.1 68418.m03955 triose phosphate/phosphate translocator,
           putative similar to SWISS-PROT:P52178 triose
           phosphate/phosphate translocator [Cauliflower] {Brassica
           oleracea}
          Length = 408

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +2

Query: 134 VYSIPSLQRRRWSLCSS 184
           V SIPSL RR W L SS
Sbjct: 43  VVSIPSLSRRSWRLASS 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,239,749
Number of Sequences: 28952
Number of extensions: 201980
Number of successful extensions: 553
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)