Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1094
         (815 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6IE02 Cluster: Mod(Mdg4)-heS00531; n=1; Bombyx mori|Re...   153   4e-36
UniRef50_Q57Y62 Cluster: Putative uncharacterized protein; n=1; ...    38   0.23 
UniRef50_A7EWQ4 Cluster: Putative uncharacterized protein; n=1; ...    36   1.6  
UniRef50_UPI0000DBFFDF Cluster: UPI0000DBFFDF related cluster; n...    34   3.7  

>UniRef50_Q6IE02 Cluster: Mod(Mdg4)-heS00531; n=1; Bombyx mori|Rep:
           Mod(Mdg4)-heS00531 - Bombyx mori (Silk moth)
          Length = 344

 Score =  153 bits (372), Expect = 4e-36
 Identities = 72/85 (84%), Positives = 72/85 (84%)
 Frame = +1

Query: 1   AKRKCVDPLEAGPSGSAKDEFVTIPDEDENNAVAPKMEPEFVNESMWXXXXXXXXXXXXX 180
           AKRKCVDPLEAGPSGSAKDEFVTIPDEDENNAVAPKMEPEFVNESMW             
Sbjct: 186 AKRKCVDPLEAGPSGSAKDEFVTIPDEDENNAVAPKMEPEFVNESMWDDDEDGTNNDETN 245

Query: 181 YGEDDSNMEMTGFDGSATGDVNISG 255
           YGEDDSNMEMTGFDGSATGDVNISG
Sbjct: 246 YGEDDSNMEMTGFDGSATGDVNISG 270


>UniRef50_Q57Y62 Cluster: Putative uncharacterized protein; n=1;
            Trypanosoma brucei|Rep: Putative uncharacterized protein
            - Trypanosoma brucei
          Length = 3030

 Score = 38.3 bits (85), Expect = 0.23
 Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = +1

Query: 25   LEAGPSGSAKDEFVTIPDEDENNAVAPKMEPEFVNESMWXXXXXXXXXXXXXYGEDDSNM 204
            L A P+     EFV +  ED   A++P  EP+   E  W             + ++   +
Sbjct: 834  LVAVPAPPVAPEFVPVYTEDGCVALSPPREPQKDEEVRWDIRPCQEASAPPYFSKEKQKV 893

Query: 205  EMT-GFDGSATGDVNISGVKVEQ 270
            ++T G++GSA   V + GV+V++
Sbjct: 894  DLTKGYNGSADALVVVCGVEVDR 916


>UniRef50_A7EWQ4 Cluster: Putative uncharacterized protein; n=1;
           Sclerotinia sclerotiorum 1980|Rep: Putative
           uncharacterized protein - Sclerotinia sclerotiorum 1980
          Length = 803

 Score = 35.5 bits (78), Expect = 1.6
 Identities = 24/73 (32%), Positives = 36/73 (49%)
 Frame = +2

Query: 35  VPLVLQKTNL*RYQTKMRTMLSLPKWNQSLLMRVCGMTMKMARTMTKLITERTILIWK*L 214
           V LV+ +  + RYQ   R +LSL    Q L+   C  T   A T +   + R + +WK  
Sbjct: 559 VSLVISRKTVWRYQALFRYLLSLRYLEQQLVS--CWQTHNRAATWSHKSSNRNLELWKRR 616

Query: 215 VLMALQLEMLIFL 253
           V   L+  ML+F+
Sbjct: 617 V-FTLRARMLVFV 628


>UniRef50_UPI0000DBFFDF Cluster: UPI0000DBFFDF related cluster; n=1;
           Rattus norvegicus|Rep: UPI0000DBFFDF UniRef100 entry -
           Rattus norvegicus
          Length = 423

 Score = 34.3 bits (75), Expect = 3.7
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 175 FRHCSCHLHRHP-TYSH*QTLVPFWERQHCSH 83
           ++H   H H H  T+SH  T  PFW R   SH
Sbjct: 351 YKHTHTHTHTHTLTHSHTHTHAPFWMRMRTSH 382


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 764,816,542
Number of Sequences: 1657284
Number of extensions: 14279814
Number of successful extensions: 34427
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 33279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34424
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70789333940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)