Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1094
         (815 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    28   1.8  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    27   3.2  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    27   4.2  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   9.7  

>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -2

Query: 406 SSSTSLQFLRTVIMPSGSCAKVYLFAINSRRELDKRMNLISCASPTAPPSPQKY 245
           SSS +LQF  T   P+ S   VY   ++    +D     I  A+   PPS  K+
Sbjct: 41  SSSPTLQFRPTSRYPTLSHEPVYTNVLDLSSRIDANRASIMSATMGTPPSALKF 94


>SPAC6G9.04 |mug79||meiotically upregulated gene
            Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 566  RPKFNYFNVF*CYHERD*KKFFFLPW*RRGVI 661
            RP F+ FN    +H ++ K    LPW RRG+I
Sbjct: 1021 RPHFSVFNY--THHMQEEKTHNRLPWHRRGMI 1050


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -2

Query: 175 FRHCSCHLHRHPTYSH*QTLVPFWERQHCSHLRLVSSQIRLLQNQRDLLPVD 20
           FRH    LH HP + H  +++P        H++LV  +++ L +   LL  D
Sbjct: 73  FRHGYWKLHPHPHHQH-DSIIPASWIHDTPHMKLVFHRLQNLPDGDLLLEND 123


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 35  VPLVLQKTNL*RYQTKMRTMLSLPKWNQSLLMRVCG 142
           VPL+ QKT +     K+ ++  LPK N+  +  +CG
Sbjct: 391 VPLI-QKTKIAVVVRKIFSLAGLPKENEDEVKSICG 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,173,973
Number of Sequences: 5004
Number of extensions: 61061
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)