BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1094 (815 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_03_0193 + 12477565-12478229,12478298-12478423,12478508-12478688 30 1.9 02_05_1077 - 33938766-33939201,33939316-33939398 30 1.9 02_03_0136 + 15621318-15621748,15621836-15621967,15622065-15622263 30 1.9 04_03_0520 - 16748646-16748741,16748821-16748895,16749260-167493... 29 4.4 03_05_1157 + 30816143-30816359,30817005-30817120 28 7.7 >04_03_0193 + 12477565-12478229,12478298-12478423,12478508-12478688 Length = 323 Score = 30.3 bits (65), Expect = 1.9 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Frame = +2 Query: 362 RHYYCSKKLKGCRARIFLSKDKTE----IVLMDNTHNHTP 469 R YY L+GC AR + +D T+ IV + H H+P Sbjct: 264 RGYYKCSTLRGCPARKHVERDPTDPSMLIVTYEGEHRHSP 303 >02_05_1077 - 33938766-33939201,33939316-33939398 Length = 172 Score = 30.3 bits (65), Expect = 1.9 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = +3 Query: 714 ANTGPSNSSASQNLPPVGNATH*EDPART 800 A T + SSAS PP+GNA +D ART Sbjct: 108 AATAAAASSASATTPPLGNAAAADDDART 136 >02_03_0136 + 15621318-15621748,15621836-15621967,15622065-15622263 Length = 253 Score = 30.3 bits (65), Expect = 1.9 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%) Frame = +2 Query: 362 RHYYCSKKLKGCRARIFLSKDKTE----IVLMDNTHNHTPPVYQKAD 490 R YY ++GC AR + +D E IV D H H P +++ D Sbjct: 188 RGYYKCSTVRGCPARKHVERDPGEPAMLIVTYDGDHRHGEPGHRRPD 234 >04_03_0520 - 16748646-16748741,16748821-16748895,16749260-16749362, 16749635-16749783,16750986-16751110,16751320-16751389 Length = 205 Score = 29.1 bits (62), Expect = 4.4 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +2 Query: 74 QTKMRTMLSLPKWNQSLLMRVCGMTMKMARTMT 172 Q K+ + LP + SL + G TMK+ART T Sbjct: 170 QQKVHVQIDLPSQSSSLSITKKGQTMKVARTNT 202 >03_05_1157 + 30816143-30816359,30817005-30817120 Length = 110 Score = 28.3 bits (60), Expect = 7.7 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = -3 Query: 150 IVIPHTLINKLWFHFGSDSIVLIFVW 73 ++IPH +NK FH S +++LIF+W Sbjct: 85 LIIPHDTLNKGKFHKRS-NLLLIFLW 109 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,843,823 Number of Sequences: 37544 Number of extensions: 402866 Number of successful extensions: 1055 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1022 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1054 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2232933960 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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