Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1094
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0193 + 12477565-12478229,12478298-12478423,12478508-12478688     30   1.9  
02_05_1077 - 33938766-33939201,33939316-33939398                       30   1.9  
02_03_0136 + 15621318-15621748,15621836-15621967,15622065-15622263     30   1.9  
04_03_0520 - 16748646-16748741,16748821-16748895,16749260-167493...    29   4.4  
03_05_1157 + 30816143-30816359,30817005-30817120                       28   7.7  

>04_03_0193 + 12477565-12478229,12478298-12478423,12478508-12478688
          Length = 323

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +2

Query: 362 RHYYCSKKLKGCRARIFLSKDKTE----IVLMDNTHNHTP 469
           R YY    L+GC AR  + +D T+    IV  +  H H+P
Sbjct: 264 RGYYKCSTLRGCPARKHVERDPTDPSMLIVTYEGEHRHSP 303


>02_05_1077 - 33938766-33939201,33939316-33939398
          Length = 172

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = +3

Query: 714 ANTGPSNSSASQNLPPVGNATH*EDPART 800
           A T  + SSAS   PP+GNA   +D ART
Sbjct: 108 AATAAAASSASATTPPLGNAAAADDDART 136


>02_03_0136 + 15621318-15621748,15621836-15621967,15622065-15622263
          Length = 253

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +2

Query: 362 RHYYCSKKLKGCRARIFLSKDKTE----IVLMDNTHNHTPPVYQKAD 490
           R YY    ++GC AR  + +D  E    IV  D  H H  P +++ D
Sbjct: 188 RGYYKCSTVRGCPARKHVERDPGEPAMLIVTYDGDHRHGEPGHRRPD 234


>04_03_0520 -
           16748646-16748741,16748821-16748895,16749260-16749362,
           16749635-16749783,16750986-16751110,16751320-16751389
          Length = 205

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 74  QTKMRTMLSLPKWNQSLLMRVCGMTMKMARTMT 172
           Q K+   + LP  + SL +   G TMK+ART T
Sbjct: 170 QQKVHVQIDLPSQSSSLSITKKGQTMKVARTNT 202


>03_05_1157 + 30816143-30816359,30817005-30817120
          Length = 110

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = -3

Query: 150 IVIPHTLINKLWFHFGSDSIVLIFVW 73
           ++IPH  +NK  FH  S +++LIF+W
Sbjct: 85  LIIPHDTLNKGKFHKRS-NLLLIFLW 109


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,843,823
Number of Sequences: 37544
Number of extensions: 402866
Number of successful extensions: 1055
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)