Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1094
         (815 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)                   33   0.37 
SB_23915| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_17327| Best HMM Match : DUF1161 (HMM E-Value=3)                     30   2.0  
SB_47975| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_46967| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-19)                 28   7.9  

>SB_27310| Best HMM Match : CUB (HMM E-Value=9.7e-17)
          Length = 761

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
 Frame = -3

Query: 222 IKTSHFHIRIVLSVISFVIVRAIFIVIP--HTLINKLWFHFGS-DSIVLIFVWYRHKFV- 55
           +  S F + +++ V+  V+V  + +      T +N L  +  + D + L+FV  ++ F+ 
Sbjct: 598 VLASVFAVLVLIGVVGNVLVCLVILRFSSMRTPMNYLLLNLAAADLLTLLFVSPQYVFIH 657

Query: 54  -FCRTRGTCFQWIYAFSFR 1
            F    G CF + +AF+FR
Sbjct: 658 TFVHPIGECFSFFFAFAFR 676


>SB_23915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = -3

Query: 210 HFHIRIVLSVISFVIVRAIFIVIPHTLINKL 118
           HF  R VL V+ FV V +I IV+P+ L+ +L
Sbjct: 130 HFGPRTVLGVVVFVWVLSIAIVLPYMLVLRL 160


>SB_17327| Best HMM Match : DUF1161 (HMM E-Value=3)
          Length = 345

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 186 SVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVWYRHKFVFCRTRG--TCFQWIY 16
           +++S  +   I   I +T  NKL  H  +D  VL ++    K   CR +G  T FQ +Y
Sbjct: 178 TIVSKCVTSYISEFIGNTSTNKLDVHCTADKAVLSYIVMDRKLNVCRWQGYWTLFQLLY 236


>SB_47975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 20 IHWKQVPLVLQKTNL*RYQTK 82
          +H++ +P V+QKTNL RY  K
Sbjct: 24 VHFRSMPRVVQKTNLTRYNLK 44


>SB_46967| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-19)
          Length = 341

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = -3

Query: 249 NINISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVW 73
           NI+   C A+  +   I     +   V+    +I+I H +  KLW      SIVL  VW
Sbjct: 96  NIHHKVCLAMDITSRFIAYSTVLHLLVVTLERYIMIVHAMKYKLWITKKRTSIVLTSVW 154


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,717,143
Number of Sequences: 59808
Number of extensions: 459129
Number of successful extensions: 1088
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)