Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1094
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U53342-5|AAA96217.1|  178|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p...    29   4.0  
AL032632-8|CAA21592.2|  420|Caenorhabditis elegans Hypothetical ...    29   4.0  

>Z77656-2|CAE17769.1|  724|Caenorhabditis elegans Hypothetical
           protein F07B10.4 protein.
          Length = 724

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/71 (28%), Positives = 35/71 (49%)
 Frame = -3

Query: 219 KTSHFHIRIVLSVISFVIVRAIFIVIPHTLINKLWFHFGSDSIVLIFVWYRHKFVFCRTR 40
           KT  +HI++ +  +   +++A+F+V+P T I  L  +F S  I      Y +  +    +
Sbjct: 627 KTVKYHIQVTVLFLCSCVIQALFVVLPVTHI-VLCVYFDSFKIYTKDYIY-YSLLTQAHQ 684

Query: 39  GTCFQWIYAFS 7
           GT F   Y  S
Sbjct: 685 GTAFTLFYVLS 695


>U53342-5|AAA96217.1|  178|Caenorhabditis elegans Hypothetical
           protein F01G12.1 protein.
          Length = 178

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 138 HTLINKLWFHFGSDSIVLIFVW-YRHKFVFCRTRGTCF-QWIYA 13
           HT+  K+WFH+G D +VL   W    K       G  F  WI+A
Sbjct: 116 HTM--KMWFHWGFDEVVLFDFWRIDDKNALAVILGAGFGHWIFA 157


>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
           protein Y49E10.19 protein.
          Length = 1159

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -2

Query: 406 SSSTSLQFLRTVIMPSGSCAKVYLFAINSRRELDKRMNLISCASPTAPPSP 254
           S+S+      ++  PS S A     A   R + ++++   S A+ TAPP+P
Sbjct: 374 STSSPKTLSESIFSPSKSAAVEGSIATTRRLQFEEKLKKSSSANVTAPPAP 424


>AL032632-8|CAA21592.2|  420|Caenorhabditis elegans Hypothetical
           protein Y11D7A.13 protein.
          Length = 420

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 359 RRHYYCSKKLKGCRARIFLSKDKTEIVLMDNTHNHTPP 472
           +R + C +K   C ARI    D   ++     HNH PP
Sbjct: 162 KRFFRCERK-NTCPARIHTPFDAERVIHKVQVHNHPPP 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,779,996
Number of Sequences: 27780
Number of extensions: 349823
Number of successful extensions: 845
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)