Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1094
(815 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g27980.1 68414.m03427 pyridoxal-dependent decarboxylase famil... 33 0.30
At5g58950.1 68418.m07384 protein kinase family protein concontai... 29 3.7
At1g30650.1 68414.m03748 WRKY family transcription factor contai... 29 3.7
At5g63540.1 68418.m07975 expressed protein ; expression support... 29 4.9
At3g18520.2 68416.m02354 histone deacetylase family protein simi... 28 6.4
At3g18520.1 68416.m02353 histone deacetylase family protein simi... 28 6.4
At3g55130.1 68416.m06122 ABC transporter family protein breast c... 28 8.5
At2g34830.1 68415.m04276 WRKY family transcription factor 28 8.5
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 28 8.5
>At1g27980.1 68414.m03427 pyridoxal-dependent decarboxylase family
protein similar to sphingosine-1-phosphate lyase [Homo
sapiens] GI:10129683; contains Pfam profile PF00282:
Pyridoxal-dependent decarboxylase conserved domain
Length = 544
Score = 32.7 bits (71), Expect = 0.30
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +1
Query: 4 KRKCVDPLEAGPSGSAKDEFVTIPDEDENNAVAPKMEPEFVNESMW 141
K+K VD L++G S K++ +P + V KME E N+++W
Sbjct: 84 KQKVVDQLQSGSSSKKKNKTEVLPVKGLGVEVLEKMENEKRNDAIW 129
>At5g58950.1 68418.m07384 protein kinase family protein concontains
protein kinase domain, Pfam:PF00069
Length = 525
Score = 29.1 bits (62), Expect = 3.7
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +1
Query: 58 EFVTIPDEDENNAVAPKMEPEFVNE 132
+ +T+PD+D+N + ++E +F E
Sbjct: 234 KLITVPDDDDNGCLGARLEKQFTKE 258
>At1g30650.1 68414.m03748 WRKY family transcription factor contains
Pfam profile: PF03106 WRKY DNA -binding domain
Length = 430
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Frame = +2
Query: 362 RHYYCSKKLKGCRARIFLSKDKTE----IVLMDNTHNHTPPVYQKA 487
R YY KGC AR + + +T+ ++ + HNH P+ + A
Sbjct: 237 RGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPIQRNA 282
>At5g63540.1 68418.m07975 expressed protein ; expression supported
by MPSS
Length = 602
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 567 ALSSTISMSFNAITKETKKNFFSYLGNVEGL 659
ALSS+ S NA+ KE K F +L + EG+
Sbjct: 521 ALSSSAPTSLNAMMKEKLKRFQLFLADFEGI 551
>At3g18520.2 68416.m02354 histone deacetylase family protein similar
to SP|P53973 Histone deacetylase HDA1 {Saccharomyces
cerevisiae}; contains Pfam profile PF00850: Histone
deacetylase family; AT-acceptor splice site at intron 7
Length = 556
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 643 VTSRGYSRFTELLGELTGLK 702
VT GYSR T++LG+L G K
Sbjct: 420 VTPAGYSRMTQMLGDLCGGK 439
>At3g18520.1 68416.m02353 histone deacetylase family protein similar
to SP|P53973 Histone deacetylase HDA1 {Saccharomyces
cerevisiae}; contains Pfam profile PF00850: Histone
deacetylase family; AT-acceptor splice site at intron 7
Length = 552
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 643 VTSRGYSRFTELLGELTGLK 702
VT GYSR T++LG+L G K
Sbjct: 416 VTPAGYSRMTQMLGDLCGGK 435
>At3g55130.1 68416.m06122 ABC transporter family protein breast
cancer resistance protein 1 BCRP1, Mus musculus,
EMBL:NP_036050
Length = 725
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +1
Query: 220 DGSATGDVNISGVKVEQSAMHKISNSYV 303
+GS G V ++G KV QS + K+ ++YV
Sbjct: 136 EGSLRGSVTLNGEKVLQSRLLKVISAYV 163
>At2g34830.1 68415.m04276 WRKY family transcription factor
Length = 427
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Frame = +2
Query: 362 RHYYCSKKLKGCRARIFLSKDKTE----IVLMDNTHNHTPPVYQKA 487
R YY KGC AR + + +T+ ++ + HNH P + A
Sbjct: 235 RGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNA 280
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +1
Query: 19 DPLEAGPSGSAKDEFVTIPDEDENNAVAPKMEPEFVNESMW 141
+PLE G D F T+P+ P +E + ++W
Sbjct: 550 EPLERNGGGEGLDTFETVPEAAPAELKEPPIEDQLAFHTLW 590
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,808,683
Number of Sequences: 28952
Number of extensions: 329317
Number of successful extensions: 774
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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