Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1092
(600 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein L18|Schizos... 107 1e-24
SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein L18|S... 107 1e-24
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 29 0.52
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 28 0.91
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ... 28 1.2
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 27 1.6
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 27 2.1
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 27 2.1
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 27 2.8
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer... 26 3.7
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 26 3.7
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 26 4.8
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 25 8.5
SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|... 25 8.5
>SPAPB17E12.13 |rpl1802|rpl18-2|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 1|||Manual
Length = 187
Score = 107 bits (257), Expect = 1e-24
Identities = 54/90 (60%), Positives = 65/90 (72%)
Frame = +3
Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 434
GTVT+D RL +PK++VAAL T+ ARARIL AGGE+LT DQLALRAPTG TVL++G++
Sbjct: 86 GTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLLRGKK 145
Query: 435 NAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524
+AR A RHFG P H PYVR K
Sbjct: 146 HAREAYRHFG---FGPHKHKAPYVRSEGRK 172
Score = 63.3 bits (147), Expect = 3e-11
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Frame = +1
Query: 7 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 186
MGIDI H RK +R++ S+++ T+++FN+ +L+RLF S+ NRPP
Sbjct: 1 MGIDIERHHVRKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60
Query: 187 ISVSRLA--RHMKKPTREGLIAVVVG 258
IS+S++A K + EG V+VG
Sbjct: 61 ISISKIAALTSRKSASLEGKTTVIVG 86
>SPBC11C11.07 |rpl1801|rpl18-1, rpl18|60S ribosomal protein
L18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 107 bits (257), Expect = 1e-24
Identities = 53/90 (58%), Positives = 65/90 (72%)
Frame = +3
Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 434
GTVT+D R+ +PK+++AAL T+ ARARIL AGGE+LT DQLALRAPTG TVLV+G++
Sbjct: 86 GTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSNTVLVRGKK 145
Query: 435 NAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524
+AR A RHFG P H PYVR K
Sbjct: 146 HAREAYRHFG---FGPHKHKAPYVRSEGRK 172
Score = 59.3 bits (137), Expect = 4e-10
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = +1
Query: 7 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 186
MGIDI H +K +R++ S+++ T+++FN+ +L+RLF S+ NRPP
Sbjct: 1 MGIDIERHHVKKSQRSKPASENVYLKLLVKLYRFLARRTDSRFNKAILKRLFQSKTNRPP 60
Query: 187 ISVSRLA--RHMKKPTREGLIAVVVG 258
IS+S++A K + + VVVG
Sbjct: 61 ISISKIAALTSRKSASSQNKTTVVVG 86
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 29.1 bits (62), Expect = 0.52
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Frame = -2
Query: 410 LLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCPT---TTAI 240
L+A ST S K S + F K S RYL Q IC+ P+ T++
Sbjct: 53 LVADFSTHSNPSKDNQLISPPKINHREFLNEEKESDTQTRYLKQLINICNSPSKNHETSL 112
Query: 239 NPSRVGFFMWRAKRDTEI 186
+PS+ K D EI
Sbjct: 113 SPSKSTIDNNERKLDNEI 130
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 28.3 bits (60), Expect = 0.91
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -2
Query: 368 KNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCPT 252
KN+ SS + TS + N+ +S+R +R +QS V + PT
Sbjct: 170 KNWLSSELSHSTSKYLNITTSNRFIRKAIQSLVKIEFPT 208
>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 495
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +3
Query: 270 DVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQL 383
D+ Y+IP + + + TE+A+ R G+IL D +
Sbjct: 59 DLLFYEIPFLLIKHIENTEEAKLRFALPQGQILEIDTI 96
>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 371 SKNFSSSSQNACTSFFGNMKSSHRH 297
SKN SS N+ TSFF ++ + +RH
Sbjct: 2 SKNSFSSMANSVTSFFQSLTTPNRH 26
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = +1
Query: 349 LLEEKFLLLISWLFVLRLARRQY----WYKVSEMLVRQCVTLALLQEHRAL 489
LL F+ ++ ++ LRL + WY ++++L+ +C T + RAL
Sbjct: 134 LLLSSFVFILPYMPSLRLQESEVFSAQWYPLADLLLPECQTRIQIDSSRAL 184
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/58 (27%), Positives = 30/58 (51%)
Frame = -2
Query: 416 YCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCPTTTA 243
Y + +ST + + S F+ +QN+ + F N +S + + Q++ I PTT+A
Sbjct: 160 YKSIFDKSTSNSTVTSNQFNKPTQNSPFNSFSNNNNSFNNNQ---QANDIFGAPTTSA 214
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 26.6 bits (56), Expect = 2.8
Identities = 24/83 (28%), Positives = 34/83 (40%)
Frame = -2
Query: 395 STKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRYLVQSHVICDCPTTTAINPSRVGFF 216
S+K + N SS + SF + SS RY Q CPT ++ R
Sbjct: 104 SSKFVQLNRPNNVSSGDGSDGSFLPPI-SSDEMTRY--QQMFTTVCPTDGLMDGDRASSI 160
Query: 215 MWRAKRDTEIGGRLIRLIKSRRR 147
RA TEI R+ L+ + +R
Sbjct: 161 FGRAPLSTEILARVWNLVDTHKR 183
>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
Mam4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 236
Score = 26.2 bits (55), Expect = 3.7
Identities = 26/105 (24%), Positives = 43/105 (40%)
Frame = -2
Query: 470 SRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLR 291
S AKV +CL S + + S L + SS+ F ++ +S R+
Sbjct: 95 SFAKVINCLRFPSFLINFIFSVYQTSALGFLCLGQYLRSSAMVQAGQSFSHIVASKRNKD 154
Query: 290 YLVQSHVICDCPTTTAINPSRVGFFMWRAKRDTEIGGRLIRLIKS 156
+L+ + D +PS VGFF+W +G + L+ S
Sbjct: 155 HLL----VTDGIYAYVRHPSYVGFFIWALGTQMLLGNFVSTLLFS 195
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 3.7
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = -2
Query: 503 IGFSVRARCS-WSRAKVTHCLTSISLTLYQYCLLASRSTKSQLIKS----KNFSSSSQNA 339
+G S+ A W RA + C I L+ + + TK + KN SS++ A
Sbjct: 305 LGISLGASSGKWRRANIL-CYLIIGGCLFVFAFIYDTFTKRNAVLPPPFFKNRSSAALLA 363
Query: 338 CTSFF 324
C+SFF
Sbjct: 364 CSSFF 368
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/41 (24%), Positives = 22/41 (53%)
Frame = -1
Query: 339 VHELFR*HEEQPPSSSVSCTVSRHL*LSHYHGNQSLTSWLL 217
VH+ + + E+P S + + H ++ +G + LT W++
Sbjct: 26 VHQFYWTYTEEPHKSRRAAILKAHPEIASLNGYEPLTKWIV 66
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 409 RQYWYKVSEMLVRQCVTLALLQEHRALTLN 498
R +YK SE ++ Q + +LQ+ ALT N
Sbjct: 104 RYCYYKESEKILGQTYGMLVLQDFEALTPN 133
>SPCC1682.11c |||DUF580 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = -2
Query: 317 MKSSHRHLRYLVQSHVICDCPTTTAINPSRVGFFMWRAKRDTEIGGRLIRL 165
+K+S HL +Q ++ + P + +++WR + E +IRL
Sbjct: 231 LKASRIHLETSIQPKLMLLTGIILLVAPILLSYYVWRRRIHFETSFNIIRL 281
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,665
Number of Sequences: 5004
Number of extensions: 53579
Number of successful extensions: 163
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -