Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1092
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 130 6e-31
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 129 2e-30
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 111 5e-25
04_01_0249 - 3284107-3286377 32 0.40
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302... 29 2.8
07_01_0755 - 5806614-5806939,5807039-5809415 29 3.8
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407... 28 5.0
11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456... 28 6.6
09_04_0584 - 18714461-18716296 28 6.6
>07_03_1667 +
28484069-28484071,28484151-28484240,28484339-28484491,
28484575-28484757,28486137-28486295
Length = 195
Score = 130 bits (315), Expect = 6e-31
Identities = 61/90 (67%), Positives = 73/90 (81%)
Frame = +3
Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 434
GTVT+D R+Y++P M VAAL TE ARARI+ AGGE LTFDQLALRAP G+ TVL++G +
Sbjct: 91 GTVTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTFDQLALRAPLGQNTVLLRGPK 150
Query: 435 NAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524
NAR AV+HFGPAPG P S+TKPYVR + K
Sbjct: 151 NAREAVKHFGPAPGVPHSNTKPYVRSKGRK 180
Score = 60.1 bits (139), Expect = 1e-09
Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Frame = +1
Query: 7 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 183
MGID + ++K +RT +S+D+ T + FN ++L+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRP 60
Query: 184 PISVSRLARHM--KKPTREGL----IAVVVG 258
P+S+ RL R M K P R + IAV+VG
Sbjct: 61 PLSMRRLVRFMEGKVPDRHAISGDQIAVIVG 91
>05_01_0401 +
3169979-3169981,3170071-3170160,3170556-3170684,
3170814-3170999,3172001-3172159
Length = 188
Score = 129 bits (311), Expect = 2e-30
Identities = 62/90 (68%), Positives = 71/90 (78%)
Frame = +3
Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 434
GTVT+D R+ +IPKM V AL TE ARARI+ AGGE LTFDQLALRAP G+ TVL++G +
Sbjct: 84 GTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALRAPLGENTVLLRGPK 143
Query: 435 NAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524
NAR AVRHFG APG P SHTKPYVR + K
Sbjct: 144 NAREAVRHFGKAPGVPHSHTKPYVRSKGRK 173
Score = 61.3 bits (142), Expect = 6e-10
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 7 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 183
MGID + ++K +RT +S D+ T + FN ++L+RLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP 60
Query: 184 PISVSRLARHMKKPTREGLIAVVVG 258
P+S+ RLA+ M + E IAV+VG
Sbjct: 61 PLSLRRLAKFM-EGKEENNIAVIVG 84
>03_02_0954 -
12687373-12687582,12688885-12689067,12689160-12689288,
12689375-12689464,12689548-12689550
Length = 204
Score = 111 bits (266), Expect = 5e-25
Identities = 60/107 (56%), Positives = 72/107 (67%), Gaps = 17/107 (15%)
Frame = +3
Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKT------- 413
GTVT+D R+Y++P M VAAL TE ARARI+ GGE LTFDQLALRAP G+ T
Sbjct: 83 GTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALRAPLGQNTYIAMPEI 142
Query: 414 ----------VLVQGQRNAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524
VL++G +NAR AV+HFGPAPG P S+TKPYVR + K
Sbjct: 143 LTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRK 189
Score = 63.7 bits (148), Expect = 1e-10
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 7 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 183
MGID + ++K +RT KS D+ T + FN ++LRRLFMS+ NRP
Sbjct: 1 MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60
Query: 184 PISVSRLARHMKKPTREGLIAVVVG 258
P+S+ RL R M+ +E IAV+VG
Sbjct: 61 PLSLRRLVRFME--GKENQIAVIVG 83
>04_01_0249 - 3284107-3286377
Length = 756
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +1
Query: 145 VLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGQSQMT*DCTRY 291
++RRL +S +N + R+ + KKPTR + + +GQ + +CTRY
Sbjct: 359 LIRRLIVSDLN-----LFRILDNNKKPTRYRMWSQTIGQYNLLHECTRY 402
>03_05_0379 +
23628200-23628366,23629074-23629133,23630177-23630209,
23630253-23630665,23631522-23632008,23632623-23633334
Length = 623
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = +2
Query: 392 CSDWQEDSTGTRSAKCSLGSASLWPCSRSTALSH*TLCSTKGH 520
CS E + G +C G W C +T L+H S GH
Sbjct: 365 CSKPIEKNGGCNHVRCKCGQCLCWLCGAATGLAH-NWTSIDGH 406
>07_01_0755 - 5806614-5806939,5807039-5809415
Length = 900
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = -2
Query: 338 CTSFFGNMKS-SHRHLRYLVQSHVICDCPTTTAINPSRVGFFMWRAKRDTEIGGRL 174
C +G+ HR + Y V V+ C ++ V FMWR +++ E ++
Sbjct: 525 CGPIYGSSYGMDHRKISYRVALAVVGSCVLIFSVVSLVVALFMWRERQEKEAEAKM 580
>11_01_0520 +
4078075-4078198,4078726-4078957,4079068-4079147,
4079256-4079409,4079438-4079494,4080733-4080811,
4081013-4081094,4081168-4081223,4081310-4081492
Length = 348
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 353 SSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 255
SS ++ SF + SS+RHL L+ + + CP
Sbjct: 96 SSLDSVRSFAKSFNSSYRHLNVLINNAGVMSCP 128
>11_01_0572 +
4565353-4565535,4566856-4567095,4567922-4568086,
4568612-4568887
Length = 287
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 367 LLLISWLFVLRLARRQYWYKVSEML 441
LL+++WLFV+ RR W +V E+L
Sbjct: 143 LLVLAWLFVIDFGRR-VWGEVDELL 166
>09_04_0584 - 18714461-18716296
Length = 611
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 468 APGAPRSHTKPYVRPRDMKKQGPVVVL 548
A G PR PY +P D+KK V VL
Sbjct: 218 ALGLPRGQIPPYKKPHDLKKVWKVGVL 244
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,375,993
Number of Sequences: 37544
Number of extensions: 387060
Number of successful extensions: 1078
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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