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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1092
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844...   130   6e-31
05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317...   129   2e-30
03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892...   111   5e-25
04_01_0249 - 3284107-3286377                                           32   0.40 
03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302...    29   2.8  
07_01_0755 - 5806614-5806939,5807039-5809415                           29   3.8  
11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407...    28   5.0  
11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456...    28   6.6  
09_04_0584 - 18714461-18716296                                         28   6.6  

>07_03_1667 +
           28484069-28484071,28484151-28484240,28484339-28484491,
           28484575-28484757,28486137-28486295
          Length = 195

 Score =  130 bits (315), Expect = 6e-31
 Identities = 61/90 (67%), Positives = 73/90 (81%)
 Frame = +3

Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 434
           GTVT+D R+Y++P M VAAL  TE ARARI+ AGGE LTFDQLALRAP G+ TVL++G +
Sbjct: 91  GTVTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTFDQLALRAPLGQNTVLLRGPK 150

Query: 435 NAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524
           NAR AV+HFGPAPG P S+TKPYVR +  K
Sbjct: 151 NAREAVKHFGPAPGVPHSNTKPYVRSKGRK 180



 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
 Frame = +1

Query: 7   MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 183
           MGID +    ++K +RT  +S+D+               T + FN ++L+RLFMS+ NRP
Sbjct: 1   MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRP 60

Query: 184 PISVSRLARHM--KKPTREGL----IAVVVG 258
           P+S+ RL R M  K P R  +    IAV+VG
Sbjct: 61  PLSMRRLVRFMEGKVPDRHAISGDQIAVIVG 91


>05_01_0401 +
           3169979-3169981,3170071-3170160,3170556-3170684,
           3170814-3170999,3172001-3172159
          Length = 188

 Score =  129 bits (311), Expect = 2e-30
 Identities = 62/90 (68%), Positives = 71/90 (78%)
 Frame = +3

Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 434
           GTVT+D R+ +IPKM V AL  TE ARARI+ AGGE LTFDQLALRAP G+ TVL++G +
Sbjct: 84  GTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALRAPLGENTVLLRGPK 143

Query: 435 NAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524
           NAR AVRHFG APG P SHTKPYVR +  K
Sbjct: 144 NAREAVRHFGKAPGVPHSHTKPYVRSKGRK 173



 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
 Frame = +1

Query: 7   MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 183
           MGID +    ++K +RT  +S D+               T + FN ++L+RLFMS+ NRP
Sbjct: 1   MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP 60

Query: 184 PISVSRLARHMKKPTREGLIAVVVG 258
           P+S+ RLA+ M +   E  IAV+VG
Sbjct: 61  PLSLRRLAKFM-EGKEENNIAVIVG 84


>03_02_0954 -
           12687373-12687582,12688885-12689067,12689160-12689288,
           12689375-12689464,12689548-12689550
          Length = 204

 Score =  111 bits (266), Expect = 5e-25
 Identities = 60/107 (56%), Positives = 72/107 (67%), Gaps = 17/107 (15%)
 Frame = +3

Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKT------- 413
           GTVT+D R+Y++P M VAAL  TE ARARI+  GGE LTFDQLALRAP G+ T       
Sbjct: 83  GTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALRAPLGQNTYIAMPEI 142

Query: 414 ----------VLVQGQRNAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524
                     VL++G +NAR AV+HFGPAPG P S+TKPYVR +  K
Sbjct: 143 LTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRK 189



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
 Frame = +1

Query: 7   MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 183
           MGID +    ++K +RT  KS D+               T + FN ++LRRLFMS+ NRP
Sbjct: 1   MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60

Query: 184 PISVSRLARHMKKPTREGLIAVVVG 258
           P+S+ RL R M+   +E  IAV+VG
Sbjct: 61  PLSLRRLVRFME--GKENQIAVIVG 83


>04_01_0249 - 3284107-3286377
          Length = 756

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = +1

Query: 145 VLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGQSQMT*DCTRY 291
           ++RRL +S +N     + R+  + KKPTR  + +  +GQ  +  +CTRY
Sbjct: 359 LIRRLIVSDLN-----LFRILDNNKKPTRYRMWSQTIGQYNLLHECTRY 402


>03_05_0379 +
           23628200-23628366,23629074-23629133,23630177-23630209,
           23630253-23630665,23631522-23632008,23632623-23633334
          Length = 623

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +2

Query: 392 CSDWQEDSTGTRSAKCSLGSASLWPCSRSTALSH*TLCSTKGH 520
           CS   E + G    +C  G    W C  +T L+H    S  GH
Sbjct: 365 CSKPIEKNGGCNHVRCKCGQCLCWLCGAATGLAH-NWTSIDGH 406


>07_01_0755 - 5806614-5806939,5807039-5809415
          Length = 900

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -2

Query: 338 CTSFFGNMKS-SHRHLRYLVQSHVICDCPTTTAINPSRVGFFMWRAKRDTEIGGRL 174
           C   +G+     HR + Y V   V+  C    ++    V  FMWR +++ E   ++
Sbjct: 525 CGPIYGSSYGMDHRKISYRVALAVVGSCVLIFSVVSLVVALFMWRERQEKEAEAKM 580


>11_01_0520 +
           4078075-4078198,4078726-4078957,4079068-4079147,
           4079256-4079409,4079438-4079494,4080733-4080811,
           4081013-4081094,4081168-4081223,4081310-4081492
          Length = 348

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 353 SSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 255
           SS ++  SF  +  SS+RHL  L+ +  +  CP
Sbjct: 96  SSLDSVRSFAKSFNSSYRHLNVLINNAGVMSCP 128


>11_01_0572 +
           4565353-4565535,4566856-4567095,4567922-4568086,
           4568612-4568887
          Length = 287

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 367 LLLISWLFVLRLARRQYWYKVSEML 441
           LL+++WLFV+   RR  W +V E+L
Sbjct: 143 LLVLAWLFVIDFGRR-VWGEVDELL 166


>09_04_0584 - 18714461-18716296
          Length = 611

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 468 APGAPRSHTKPYVRPRDMKKQGPVVVL 548
           A G PR    PY +P D+KK   V VL
Sbjct: 218 ALGLPRGQIPPYKKPHDLKKVWKVGVL 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,375,993
Number of Sequences: 37544
Number of extensions: 387060
Number of successful extensions: 1078
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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