BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1092 (600 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_03_1667 + 28484069-28484071,28484151-28484240,28484339-284844... 130 6e-31 05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684,317... 129 2e-30 03_02_0954 - 12687373-12687582,12688885-12689067,12689160-126892... 111 5e-25 04_01_0249 - 3284107-3286377 32 0.40 03_05_0379 + 23628200-23628366,23629074-23629133,23630177-236302... 29 2.8 07_01_0755 - 5806614-5806939,5807039-5809415 29 3.8 11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147,407... 28 5.0 11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086,456... 28 6.6 09_04_0584 - 18714461-18716296 28 6.6 >07_03_1667 + 28484069-28484071,28484151-28484240,28484339-28484491, 28484575-28484757,28486137-28486295 Length = 195 Score = 130 bits (315), Expect = 6e-31 Identities = 61/90 (67%), Positives = 73/90 (81%) Frame = +3 Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 434 GTVT+D R+Y++P M VAAL TE ARARI+ AGGE LTFDQLALRAP G+ TVL++G + Sbjct: 91 GTVTDDKRIYEVPAMKVAALRFTETARARIINAGGECLTFDQLALRAPLGQNTVLLRGPK 150 Query: 435 NAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524 NAR AV+HFGPAPG P S+TKPYVR + K Sbjct: 151 NAREAVKHFGPAPGVPHSNTKPYVRSKGRK 180 Score = 60.1 bits (139), Expect = 1e-09 Identities = 35/91 (38%), Positives = 51/91 (56%), Gaps = 7/91 (7%) Frame = +1 Query: 7 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 183 MGID + ++K +RT +S+D+ T + FN ++L+RLFMS+ NRP Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSEDVYLKLIVKLYRFLVRRTKSHFNAVILKRLFMSKTNRP 60 Query: 184 PISVSRLARHM--KKPTREGL----IAVVVG 258 P+S+ RL R M K P R + IAV+VG Sbjct: 61 PLSMRRLVRFMEGKVPDRHAISGDQIAVIVG 91 >05_01_0401 + 3169979-3169981,3170071-3170160,3170556-3170684, 3170814-3170999,3172001-3172159 Length = 188 Score = 129 bits (311), Expect = 2e-30 Identities = 62/90 (68%), Positives = 71/90 (78%) Frame = +3 Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 434 GTVT+D R+ +IPKM V AL TE ARARI+ AGGE LTFDQLALRAP G+ TVL++G + Sbjct: 84 GTVTDDKRIQEIPKMKVTALRFTETARARIVNAGGECLTFDQLALRAPLGENTVLLRGPK 143 Query: 435 NAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524 NAR AVRHFG APG P SHTKPYVR + K Sbjct: 144 NAREAVRHFGKAPGVPHSHTKPYVRSKGRK 173 Score = 61.3 bits (142), Expect = 6e-10 Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Frame = +1 Query: 7 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 183 MGID + ++K +RT +S D+ T + FN ++L+RLFMS+ NRP Sbjct: 1 MGIDLVAGGRNKKTKRTAPRSDDVYLKLLVKLYRFLVRRTKSNFNAVILKRLFMSKTNRP 60 Query: 184 PISVSRLARHMKKPTREGLIAVVVG 258 P+S+ RLA+ M + E IAV+VG Sbjct: 61 PLSLRRLAKFM-EGKEENNIAVIVG 84 >03_02_0954 - 12687373-12687582,12688885-12689067,12689160-12689288, 12689375-12689464,12689548-12689550 Length = 204 Score = 111 bits (266), Expect = 5e-25 Identities = 60/107 (56%), Positives = 72/107 (67%), Gaps = 17/107 (15%) Frame = +3 Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKT------- 413 GTVT+D R+Y++P M VAAL TE ARARI+ GGE LTFDQLALRAP G+ T Sbjct: 83 GTVTDDKRVYEVPAMKVAALRFTETARARIVNTGGECLTFDQLALRAPLGQNTYIAMPEI 142 Query: 414 ----------VLVQGQRNAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524 VL++G +NAR AV+HFGPAPG P S+TKPYVR + K Sbjct: 143 LTIDNFALLQVLLRGPKNAREAVKHFGPAPGVPHSNTKPYVRSKGRK 189 Score = 63.7 bits (148), Expect = 1e-10 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Frame = +1 Query: 7 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 183 MGID + ++K +RT KS D+ T + FN ++LRRLFMS+ NRP Sbjct: 1 MGIDLVAGGRNKKTKRTAPKSDDVYLKLIVKLYRFLVRRTKSPFNAVILRRLFMSKTNRP 60 Query: 184 PISVSRLARHMKKPTREGLIAVVVG 258 P+S+ RL R M+ +E IAV+VG Sbjct: 61 PLSLRRLVRFME--GKENQIAVIVG 83 >04_01_0249 - 3284107-3286377 Length = 756 Score = 31.9 bits (69), Expect = 0.40 Identities = 17/49 (34%), Positives = 29/49 (59%) Frame = +1 Query: 145 VLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVGQSQMT*DCTRY 291 ++RRL +S +N + R+ + KKPTR + + +GQ + +CTRY Sbjct: 359 LIRRLIVSDLN-----LFRILDNNKKPTRYRMWSQTIGQYNLLHECTRY 402 >03_05_0379 + 23628200-23628366,23629074-23629133,23630177-23630209, 23630253-23630665,23631522-23632008,23632623-23633334 Length = 623 Score = 29.1 bits (62), Expect = 2.8 Identities = 14/43 (32%), Positives = 18/43 (41%) Frame = +2 Query: 392 CSDWQEDSTGTRSAKCSLGSASLWPCSRSTALSH*TLCSTKGH 520 CS E + G +C G W C +T L+H S GH Sbjct: 365 CSKPIEKNGGCNHVRCKCGQCLCWLCGAATGLAH-NWTSIDGH 406 >07_01_0755 - 5806614-5806939,5807039-5809415 Length = 900 Score = 28.7 bits (61), Expect = 3.8 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Frame = -2 Query: 338 CTSFFGNMKS-SHRHLRYLVQSHVICDCPTTTAINPSRVGFFMWRAKRDTEIGGRL 174 C +G+ HR + Y V V+ C ++ V FMWR +++ E ++ Sbjct: 525 CGPIYGSSYGMDHRKISYRVALAVVGSCVLIFSVVSLVVALFMWRERQEKEAEAKM 580 >11_01_0520 + 4078075-4078198,4078726-4078957,4079068-4079147, 4079256-4079409,4079438-4079494,4080733-4080811, 4081013-4081094,4081168-4081223,4081310-4081492 Length = 348 Score = 28.3 bits (60), Expect = 5.0 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = -2 Query: 353 SSQNACTSFFGNMKSSHRHLRYLVQSHVICDCP 255 SS ++ SF + SS+RHL L+ + + CP Sbjct: 96 SSLDSVRSFAKSFNSSYRHLNVLINNAGVMSCP 128 >11_01_0572 + 4565353-4565535,4566856-4567095,4567922-4568086, 4568612-4568887 Length = 287 Score = 27.9 bits (59), Expect = 6.6 Identities = 12/25 (48%), Positives = 18/25 (72%) Frame = +1 Query: 367 LLLISWLFVLRLARRQYWYKVSEML 441 LL+++WLFV+ RR W +V E+L Sbjct: 143 LLVLAWLFVIDFGRR-VWGEVDELL 166 >09_04_0584 - 18714461-18716296 Length = 611 Score = 27.9 bits (59), Expect = 6.6 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +3 Query: 468 APGAPRSHTKPYVRPRDMKKQGPVVVL 548 A G PR PY +P D+KK V VL Sbjct: 218 ALGLPRGQIPPYKKPHDLKKVWKVGVL 244 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,375,993 Number of Sequences: 37544 Number of extensions: 387060 Number of successful extensions: 1078 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 1040 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1077 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1435654836 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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