Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1092
         (600 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)              105   4e-23
SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_19920| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_55577| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_22333| Best HMM Match : COLFI (HMM E-Value=0.0083)                  27   8.8  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.8  

>SB_1564| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1066

 Score =  105 bits (251), Expect = 4e-23
 Identities = 50/84 (59%), Positives = 62/84 (73%)
 Frame = +3

Query: 243 CRGSGTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLV 422
           C   G++T+D R++++P + + AL  +E ARARIL AGGEILTFDQLALRAP G+ TVL+
Sbjct: 187 CVVVGSITDDKRIFEVPALKICALRFSETARARILKAGGEILTFDQLALRAPLGQNTVLL 246

Query: 423 QGQRNAR*AVRHFGPAPGAPRSHT 494
           QG R AR A RH G APG P S T
Sbjct: 247 QGPRKAREAERHMGLAPGVPHSDT 270



 Score = 72.9 bits (171), Expect = 2e-13
 Identities = 39/83 (46%), Positives = 48/83 (57%)
 Frame = +1

Query: 10  GIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPPI 189
           GIDI  KH +K  R E  SQ++               TNAKFNQIV++RL MSR  RPP+
Sbjct: 109 GIDIEKKHPKKNYRREPVSQNVYIRLLVKLYRFLSRRTNAKFNQIVMKRLCMSRTKRPPL 168

Query: 190 SVSRLARHMKKPTREGLIAVVVG 258
           S++RL R MK    +  I VVVG
Sbjct: 169 SLARLVRKMKASGHKDKICVVVG 191


>SB_49884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -2

Query: 398 RSTKSQLIKSKNFSSSSQNACTSFFGNMKSSHRHLRY 288
           R+ +S L+ S+N   ++QNA T+FF + K  H +  Y
Sbjct: 16  RANESTLLTSENNDIANQNADTAFFTSKKKRHNNNSY 52


>SB_19920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1035

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 25/83 (30%), Positives = 38/83 (45%)
 Frame = +2

Query: 302 GGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTGTRSAKCSLGSASLWPCSRST 481
           GG  +   K +C   G     +Y  +  S+   W+EDS G  + K +L    L     + 
Sbjct: 457 GGAPTGSNKCACGVTGTCANPAYRCNCSSNDGTWREDS-GLLTDKDTLPVIQL-RAGDTD 514

Query: 482 ALSH*TLCSTKGHEKARPSRRAN 550
           A+S  T CS K   K RP+++ N
Sbjct: 515 AISSQT-CSVKSAPKERPTKKFN 536


>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 173

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 301 RWLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRLARRQYW 420
           RWL ++  + L H  WL   ++L  +SWL+ +R      W
Sbjct: 19  RWLNYV--RWLYHVRWLYHVRWLYHVSWLYHVRWLYHVRW 56


>SB_55577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 450 VRHFGPAPGAPRSHTKPYVRPRDMKKQGPV 539
           ++HFGPA        KP   PRD+++  P+
Sbjct: 140 IKHFGPATYQRPQADKPVQIPRDLRRFKPI 169


>SB_22333| Best HMM Match : COLFI (HMM E-Value=0.0083)
          Length = 339

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 23/83 (27%), Positives = 37/83 (44%)
 Frame = +2

Query: 302 GGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTGTRSAKCSLGSASLWPCSRST 481
           GG  +   K +C   G     +Y  +  S+   W+EDS G  + K +L    L     + 
Sbjct: 184 GGAPTGSNKCACGMTGTCANPAYRCNCSSNDDTWREDS-GLLTDKDTLPVIQL-RAGDTD 241

Query: 482 ALSH*TLCSTKGHEKARPSRRAN 550
            +S  T CS K   + RP+++ N
Sbjct: 242 GISSQT-CSVKSTPQERPTKKFN 263


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 476  SWSRAKVTHCLTSISLTLYQY 414
            +W RAKV HC +S S+T+ QY
Sbjct: 2539 TWYRAKVLHCDSSFSITV-QY 2558


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,760,818
Number of Sequences: 59808
Number of extensions: 423934
Number of successful extensions: 1081
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)