Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1092
(600 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18 pro... 118 2e-26
DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18 p... 118 2e-26
BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18 p... 118 2e-26
BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18 p... 118 2e-26
BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18 p... 118 2e-26
AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18 p... 118 2e-26
BC006224-1|AAH06224.1| 194|Homo sapiens MGC11257 protein protein. 32 1.8
AF495721-1|AAQ06675.1| 194|Homo sapiens unknown protein. 32 1.8
>L11566-1|AAA16329.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 118 bits (283), Expect = 2e-26
Identities = 55/90 (61%), Positives = 67/90 (74%)
Frame = +3
Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 434
GT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R
Sbjct: 84 GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPR 143
Query: 435 NAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524
R RHFG APG P SHTKPYVR + K
Sbjct: 144 KGREVYRHFGKAPGTPHSHTKPYVRSKGRK 173
Score = 96.3 bits (229), Expect = 7e-20
Identities = 48/84 (57%), Positives = 55/84 (65%)
Frame = +1
Query: 7 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 186
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 187 ISVSRLARHMKKPTREGLIAVVVG 258
+S+SR+ R MK P RE AVVVG
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVG 84
>DQ403032-1|ABD77165.1| 164|Homo sapiens ribosomal protein L18
protein.
Length = 164
Score = 118 bits (283), Expect = 2e-26
Identities = 55/90 (61%), Positives = 67/90 (74%)
Frame = +3
Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 434
GT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R
Sbjct: 61 GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPR 120
Query: 435 NAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524
R RHFG APG P SHTKPYVR + K
Sbjct: 121 KGREVYRHFGKAPGTPHSHTKPYVRSKGRK 150
Score = 67.3 bits (157), Expect = 4e-11
Identities = 31/46 (67%), Positives = 37/46 (80%)
Frame = +1
Query: 121 TNAKFNQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLIAVVVG 258
TN+ FNQ+VL+RLFMSR NRPP+S+SR+ R MK P RE AVVVG
Sbjct: 16 TNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVG 61
>BC021743-1|AAH21743.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 118 bits (283), Expect = 2e-26
Identities = 55/90 (61%), Positives = 67/90 (74%)
Frame = +3
Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 434
GT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R
Sbjct: 84 GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPR 143
Query: 435 NAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524
R RHFG APG P SHTKPYVR + K
Sbjct: 144 KGREVYRHFGKAPGTPHSHTKPYVRSKGRK 173
Score = 94.3 bits (224), Expect = 3e-19
Identities = 47/84 (55%), Positives = 54/84 (64%)
Frame = +1
Query: 7 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 186
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 187 ISVSRLARHMKKPTREGLIAVVVG 258
+ +SR+ R MK P RE AVVVG
Sbjct: 61 LCLSRMIRKMKLPGRENKTAVVVG 84
>BC009708-1|AAH09708.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 118 bits (283), Expect = 2e-26
Identities = 55/90 (61%), Positives = 67/90 (74%)
Frame = +3
Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 434
GT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R
Sbjct: 84 GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPR 143
Query: 435 NAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524
R RHFG APG P SHTKPYVR + K
Sbjct: 144 KGREVYRHFGKAPGTPHSHTKPYVRSKGRK 173
Score = 96.3 bits (229), Expect = 7e-20
Identities = 48/84 (57%), Positives = 55/84 (65%)
Frame = +1
Query: 7 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 186
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 187 ISVSRLARHMKKPTREGLIAVVVG 258
+S+SR+ R MK P RE AVVVG
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVG 84
>BC000374-1|AAH00374.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 118 bits (283), Expect = 2e-26
Identities = 55/90 (61%), Positives = 67/90 (74%)
Frame = +3
Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 434
GT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R
Sbjct: 84 GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPR 143
Query: 435 NAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524
R RHFG APG P SHTKPYVR + K
Sbjct: 144 KGREVYRHFGKAPGTPHSHTKPYVRSKGRK 173
Score = 96.3 bits (229), Expect = 7e-20
Identities = 48/84 (57%), Positives = 55/84 (65%)
Frame = +1
Query: 7 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 186
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 187 ISVSRLARHMKKPTREGLIAVVVG 258
+S+SR+ R MK P RE AVVVG
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVG 84
>AB061825-1|BAB79463.1| 188|Homo sapiens ribosomal protein L18
protein.
Length = 188
Score = 118 bits (283), Expect = 2e-26
Identities = 55/90 (61%), Positives = 67/90 (74%)
Frame = +3
Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 434
GT+T+DVR+ ++PK+ V AL VT +AR+RIL AGG+ILTFDQLAL +P G TVL+ G R
Sbjct: 84 GTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPR 143
Query: 435 NAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524
R RHFG APG P SHTKPYVR + K
Sbjct: 144 KGREVYRHFGKAPGTPHSHTKPYVRSKGRK 173
Score = 96.3 bits (229), Expect = 7e-20
Identities = 48/84 (57%), Positives = 55/84 (65%)
Frame = +1
Query: 7 MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 186
MG+DI H DRKVRR E KSQDI TN+ FNQ+VL+RLFMSR NRPP
Sbjct: 1 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP 60
Query: 187 ISVSRLARHMKKPTREGLIAVVVG 258
+S+SR+ R MK P RE AVVVG
Sbjct: 61 LSLSRMIRKMKLPGRENKTAVVVG 84
>BC006224-1|AAH06224.1| 194|Homo sapiens MGC11257 protein protein.
Length = 194
Score = 31.9 bits (69), Expect = 1.8
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 480 VLLEQGQSDALPNEHFADLVPVLSSCQSEHEEPADQK*EFLLQQ 349
+LL SD +P+EHF+ L+ L Q E QK E L+++
Sbjct: 126 LLLHMYDSDKVPDEHFSTLLAYLEGLQGRARELTVQKAEALMRE 169
>AF495721-1|AAQ06675.1| 194|Homo sapiens unknown protein.
Length = 194
Score = 31.9 bits (69), Expect = 1.8
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 480 VLLEQGQSDALPNEHFADLVPVLSSCQSEHEEPADQK*EFLLQQ 349
+LL SD +P+EHF+ L+ L Q E QK E L+++
Sbjct: 126 LLLHMYDSDKVPDEHFSTLLAYLEGLQGRARELTVQKAEALMRE 169
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,154,644
Number of Sequences: 237096
Number of extensions: 2195618
Number of successful extensions: 4621
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4616
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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