Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1092
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical ...   134   3e-32
U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeas...    29   3.3  
U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian ...    28   5.9  
U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian ...    28   5.9  

>AL021492-6|CAA16387.1|  188|Caenorhabditis elegans Hypothetical
           protein Y45F10D.12 protein.
          Length = 188

 Score =  134 bits (325), Expect = 3e-32
 Identities = 62/89 (69%), Positives = 74/89 (83%)
 Frame = +3

Query: 258 TVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQRN 437
           TVT+D RLY +PK++VAALHVTE ARARILAAGGEI+T DQLAL++P G+ TV +QG R+
Sbjct: 85  TVTDDARLYTVPKISVAALHVTEGARARILAAGGEIITLDQLALKSPKGENTVFLQGPRS 144

Query: 438 AR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524
           AR A +HFGPAPG P SHTKPYVR +  K
Sbjct: 145 AREAEKHFGPAPGVPHSHTKPYVRSKGRK 173



 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 43/95 (45%), Positives = 53/95 (55%)
 Frame = +1

Query: 7   MGIDINHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRPP 186
           MGIDINHKHDR  RRT  KS++                T  KFN IVL+RL MSR NR P
Sbjct: 1   MGIDINHKHDRVARRTAPKSENPYLRLLSKLYAFLARRTGEKFNAIVLKRLRMSRRNRQP 60

Query: 187 ISVSRLARHMKKPTREGLIAVVVGQSQMT*DCTRY 291
           +S+++LAR ++K   E     VV  S +T D   Y
Sbjct: 61  LSLAKLARAVQKAGNEN--KTVVTLSTVTDDARLY 93


>U40415-6|AAP68933.1|  329|Caenorhabditis elegans Homolog of yeast
           longevity geneprotein 2 protein.
          Length = 329

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/56 (25%), Positives = 26/56 (46%)
 Frame = +1

Query: 304 WLLFMLPKKLVHAFWLLEEKFLLLISWLFVLRLARRQYWYKVSEMLVRQCVTLALL 471
           W    +P  +   +W+    ++ L+  +  L   R  +W    +MLV   +TLAL+
Sbjct: 125 WPFHPIPNAVAWYYWIQGGFYIALVFGILFLDAKRSDFW----QMLVHHFITLALI 176


>U38377-2|AAN72421.1|  199|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform b protein.
          Length = 199

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +3

Query: 132 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GIDCRGSGTVTNDVRLY 284
           + +D S+P+ ++P   +TN   S+  P  E++  G D       ++  R Y
Sbjct: 116 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSSQFRAY 166


>U38377-1|AAA79747.2|  283|Caenorhabditis elegans Sox (mammalian sry
           box) familyprotein 2, isoform a protein.
          Length = 283

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = +3

Query: 132 IQSDRSTPALYEPYQPATNLCVSFGAPHEEANS*GIDCRGSGTVTNDVRLY 284
           + +D S+P+ ++P   +TN   S+  P  E++  G D       ++  R Y
Sbjct: 200 VPTDNSSPSQFQPSPMSTNFAGSYLTPKSESSPVGSDSTVGTVDSSQFRAY 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,570,097
Number of Sequences: 27780
Number of extensions: 324935
Number of successful extensions: 838
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)