Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1092
(600 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein. 27 0.11
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 27 0.19
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 25 0.57
AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein. 24 1.3
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 23 3.0
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 21 7.0
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 21 7.0
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 9.2
AF393494-1|AAL60419.1| 144|Apis mellifera odorant binding prote... 21 9.2
AF166496-1|AAD51944.1| 144|Apis mellifera pheromone-binding pro... 21 9.2
>AY268030-1|AAP23055.1| 602|Apis mellifera dorsal protein protein.
Length = 602
Score = 27.5 bits (58), Expect = 0.11
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +3
Query: 66 SRYLLEVTCKALQILGQTYKCQIQSDRSTPALYEPYQPA 182
S Y + T Q QT + Q+ DR++P Y Y PA
Sbjct: 394 SLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPA 432
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 26.6 bits (56), Expect = 0.19
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 377 SAGSSCSDWQEDSTGTRSAKCSL 445
SAG+SC E TRSA C+L
Sbjct: 26 SAGTSCKWLSEGGNDTRSADCTL 48
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 25.0 bits (52), Expect = 0.57
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +2
Query: 296 DDGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTGTRSAKCS 442
+DGGCSS S+ + +++N Y SS S + + + C+
Sbjct: 924 NDGGCSSLVDVSTPVNKKVYKQNDYIVDESSSSSFYSSFLYKSSESSCN 972
>AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein.
Length = 615
Score = 23.8 bits (49), Expect = 1.3
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Frame = +2
Query: 398 DWQEDSTGTRSAKCSLGSASLWPCSRS---TALSH*TLCSTKGHEK 526
DW+ +T A S G + WP ++ T L H + +GH K
Sbjct: 123 DWKYYTTNESHACLSTGGSCYWPRGKNLGGTTLHH-GMAYHRGHRK 167
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 22.6 bits (46), Expect = 3.0
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = -2
Query: 206 AKRDTEIGGRLIRLIKSRRRTI 141
AK+ T IGG+ + ++KS +++
Sbjct: 889 AKKATNIGGKPVAVVKSSAQSL 910
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 21.4 bits (43), Expect = 7.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 261 VTNDVRLYKIPKMTVAALHVTEKARARILAAGGEIL 368
VT R+ + VAA T + ARI + GG ++
Sbjct: 1289 VTGSTRVGEGQSSKVAAQVPTNRVPARITSFGGHVV 1324
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.4 bits (43), Expect = 7.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 261 VTNDVRLYKIPKMTVAALHVTEKARARILAAGGEIL 368
VT R+ + VAA T + ARI + GG ++
Sbjct: 1285 VTGSTRVGEGQSSKVAAQVPTNRVPARITSFGGHVV 1320
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 9.2
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -3
Query: 310 AATVIFGILYSLTSFV 263
++ VIFG+L+ L SF+
Sbjct: 14 SSCVIFGVLFVLFSFL 29
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.0 bits (42), Expect = 9.2
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -3
Query: 310 AATVIFGILYSLTSFV 263
++ VIFG+L+ L SF+
Sbjct: 14 SSCVIFGVLFVLFSFL 29
>AF393494-1|AAL60419.1| 144|Apis mellifera odorant binding protein
ASP1 protein.
Length = 144
Score = 21.0 bits (42), Expect = 9.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2
Query: 434 SLTLYQYCLLASRS 393
S+T Y YCLL + S
Sbjct: 69 SITCYMYCLLEAFS 82
>AF166496-1|AAD51944.1| 144|Apis mellifera pheromone-binding
protein ASP1 protein.
Length = 144
Score = 21.0 bits (42), Expect = 9.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -2
Query: 434 SLTLYQYCLLASRS 393
S+T Y YCLL + S
Sbjct: 69 SITCYMYCLLEAFS 82
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,591
Number of Sequences: 438
Number of extensions: 3662
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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