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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1092
         (600 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi...   127   5e-30
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ...   126   1e-29
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)           118   3e-27
At2g02640.1 68415.m00203 DC1 domain-containing protein   contain...    31   0.58 
At1g73730.1 68414.m08537 ethylene-insensitive3-like3 (EIL3) iden...    29   2.4  
At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to hom...    29   3.1  
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf...    28   4.1  
At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam ...    28   4.1  
At1g05440.1 68414.m00552 expressed protein ; expression supporte...    28   4.1  
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r...    28   5.4  
At3g28360.1 68416.m03544 ABC transporter family protein similar ...    28   5.4  
At4g35730.1 68417.m05071 expressed protein  contains Pfam profil...    27   7.2  
At1g32190.1 68414.m03959 expressed protein                             27   7.2  

>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
           to GB:P42791
          Length = 187

 Score =  127 bits (307), Expect = 5e-30
 Identities = 58/90 (64%), Positives = 73/90 (81%)
 Frame = +3

Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 434
           GT+T+D+R+++IP M V AL  TE+ARARI  AGGE LTFDQLALRAP G+ TVL++G +
Sbjct: 83  GTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPK 142

Query: 435 NAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524
           N+R AV+HFGPAPG P SH+KPYVR +  K
Sbjct: 143 NSREAVKHFGPAPGVPHSHSKPYVRAKGRK 172



 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
 Frame = +1

Query: 7   MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 183
           MGID I     +K +RT  KS D+               TN+KFN ++L+RLFMS++N+ 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60

Query: 184 PISVSRLARHMKKPTREGLIAVVVG 258
           P+S+SRL   M    +E  IAV+VG
Sbjct: 61  PLSLSRLVEFM--TGKEDKIAVLVG 83


>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
           ribosomal protein L18, Arabidopsis thaliana,
           SWISSPROT:RL18_ARATH
          Length = 187

 Score =  126 bits (303), Expect = 1e-29
 Identities = 58/90 (64%), Positives = 73/90 (81%)
 Frame = +3

Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 434
           GT+T+D+R+++IP M V AL  TE+ARARI  AGGE LTFDQLALRAP G+ TVL++G +
Sbjct: 83  GTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPK 142

Query: 435 NAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524
           N+R AV+HFGPAPG P S+TKPYVR +  K
Sbjct: 143 NSREAVKHFGPAPGVPHSNTKPYVRHKGRK 172



 Score = 57.2 bits (132), Expect = 8e-09
 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
 Frame = +1

Query: 7   MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 183
           MGID I     +K +RT  KS D+               +N+ FN ++L+RLFMS++N+ 
Sbjct: 1   MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60

Query: 184 PISVSRLARHMKKPTREGLIAVVVG 258
           P+S+SRL   M    ++  IAV+VG
Sbjct: 61  PLSLSRLVEFM--TGKDDKIAVLVG 83


>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
          Length = 135

 Score =  118 bits (284), Expect = 3e-27
 Identities = 58/91 (63%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
 Frame = +3

Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPT-GKKTVLVQGQ 431
           GTVT+DVR+  +P +TV AL  TE ARARI  AGGE LTFDQLAL  PT  + TVL++G 
Sbjct: 30  GTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGP 89

Query: 432 RNAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524
           +N R AV+HFGPAPG P SHTKPYVR    K
Sbjct: 90  KNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120



 Score = 35.1 bits (77), Expect = 0.036
 Identities = 16/32 (50%), Positives = 25/32 (78%)
 Frame = +1

Query: 163 MSRINRPPISVSRLARHMKKPTREGLIAVVVG 258
           MS++N+ P+S+SRL R+M    ++G IAV+VG
Sbjct: 1   MSKVNKAPLSLSRLVRYM--DGKDGKIAVIVG 30


>At2g02640.1 68415.m00203 DC1 domain-containing protein   contains
           Pfam profile PF03107: DC1 domain
          Length = 627

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 308 CSSCYRKSSCTHFGCWRRNSYF 373
           CS+C RKS+   + C+ RN YF
Sbjct: 423 CSACMRKSNGFGYSCYNRNCYF 444


>At1g73730.1 68414.m08537 ethylene-insensitive3-like3 (EIL3)
           identical to ethylene-insensitive3-like3 (EIL3)
           GB:AF004215 [Arabidopsis thaliana] (Cell 89 (7),
           1133-1144 (1997))
          Length = 567

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 474 GAPRSHTKPYVRPRDMKKQGPVVVL 548
           G P+S + PY +P D+KK   V VL
Sbjct: 215 GLPKSQSPPYRKPHDLKKMWKVGVL 239


>At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to
           homeodomain transcription factor (AGL30) GI:3461830 from
           [Arabidopsis thaliana]; contains Pfam domain PF00319:
           SRF-type transcription factor (DNA-binding and
           dimerisation domain);  PMID: 12837945
          Length = 389

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 465 GQSDALPNEHFADLVPVLSSCQSEHEEPADQ 373
           G S  LP+      +PV SSC  E  +P DQ
Sbjct: 223 GDSSFLPHREMDGSIPVYSSCFFESTKPEDQ 253


>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 883

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 272 RETVQDTEDDGGCSSCY--RKSSCTHFGCWRRNSYF*SAGSSCS 397
           R+  + +E  GGC+SC    KS  T   C  R+  + S G+ CS
Sbjct: 145 RDHGECSESVGGCASCIVRSKSDITTSQCGDRDRRYTSPGNPCS 188


>At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam
            profile: PF03399 SAC3/GANP family
          Length = 1720

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 456  DALPNEHFADLVPVLSSCQSEHEEP 382
            +++PN     L+ V+SSC  EH EP
Sbjct: 1288 ESVPNGSVLPLLVVISSCNGEHMEP 1312


>At1g05440.1 68414.m00552 expressed protein ; expression supported
           by MPSS
          Length = 393

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 449 CLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSF 327
           CL S++ TL    L   +S+ ++L  + NF S+ ++  TSF
Sbjct: 71  CLDSLNATLDLMPLSVQKSSLTKLSSASNFKSTVESTPTSF 111


>At3g59820.1 68416.m06675 calcium-binding mitochondrial
           protein-related contains weak similarity to
           Calcium-binding mitochondrial protein Anon-60Da
           (Swiss-Prot:P91927) [Drosophila melanogaster]
          Length = 755

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 136 NQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLI 243
           +Q V    + S INRPP+    +  H     R+GL+
Sbjct: 34  SQTVHSHAYHSGINRPPVETKPVTEHKSFTRRDGLL 69


>At3g28360.1 68416.m03544 ABC transporter family protein similar to
           P-glycoprotein homologue GI:2292907 from [Hordeum
           vulgare subsp. vulgare]
          Length = 1158

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 360 EILTFDQLALRAPTGKKTVLVQGQRNAR 443
           E L FD L L+ P+GK   LV G  + +
Sbjct: 290 ETLIFDDLCLKIPSGKTVALVGGSGSGK 317


>At4g35730.1 68417.m05071 expressed protein  contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 430

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +2

Query: 299 DGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTGTRS 430
           D   SS Y K    + G  RR+SY  + G + SD++E+ T T +
Sbjct: 289 DSETSSYYAKPGAENRGMGRRHSYN-NPGINESDYEEEYTNTEA 331


>At1g32190.1 68414.m03959 expressed protein
          Length = 422

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 308 CSSCYRKSSCTHFGCWR 358
           CSSC+ K  C    CW+
Sbjct: 359 CSSCFGKPKCPKCSCWK 375


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,705,357
Number of Sequences: 28952
Number of extensions: 297198
Number of successful extensions: 789
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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