Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1092
(600 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi... 127 5e-30
At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ... 126 1e-29
At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A) 118 3e-27
At2g02640.1 68415.m00203 DC1 domain-containing protein contain... 31 0.58
At1g73730.1 68414.m08537 ethylene-insensitive3-like3 (EIL3) iden... 29 2.4
At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to hom... 29 3.1
At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 28 4.1
At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam ... 28 4.1
At1g05440.1 68414.m00552 expressed protein ; expression supporte... 28 4.1
At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 28 5.4
At3g28360.1 68416.m03544 ABC transporter family protein similar ... 28 5.4
At4g35730.1 68417.m05071 expressed protein contains Pfam profil... 27 7.2
At1g32190.1 68414.m03959 expressed protein 27 7.2
>At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar
to GB:P42791
Length = 187
Score = 127 bits (307), Expect = 5e-30
Identities = 58/90 (64%), Positives = 73/90 (81%)
Frame = +3
Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 434
GT+T+D+R+++IP M V AL TE+ARARI AGGE LTFDQLALRAP G+ TVL++G +
Sbjct: 83 GTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPK 142
Query: 435 NAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524
N+R AV+HFGPAPG P SH+KPYVR + K
Sbjct: 143 NSREAVKHFGPAPGVPHSHSKPYVRAKGRK 172
Score = 61.7 bits (143), Expect = 4e-10
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 7 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 183
MGID I +K +RT KS D+ TN+KFN ++L+RLFMS++N+
Sbjct: 1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60
Query: 184 PISVSRLARHMKKPTREGLIAVVVG 258
P+S+SRL M +E IAV+VG
Sbjct: 61 PLSLSRLVEFM--TGKEDKIAVLVG 83
>At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S
ribosomal protein L18, Arabidopsis thaliana,
SWISSPROT:RL18_ARATH
Length = 187
Score = 126 bits (303), Expect = 1e-29
Identities = 58/90 (64%), Positives = 73/90 (81%)
Frame = +3
Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 434
GT+T+D+R+++IP M V AL TE+ARARI AGGE LTFDQLALRAP G+ TVL++G +
Sbjct: 83 GTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPK 142
Query: 435 NAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524
N+R AV+HFGPAPG P S+TKPYVR + K
Sbjct: 143 NSREAVKHFGPAPGVPHSNTKPYVRHKGRK 172
Score = 57.2 bits (132), Expect = 8e-09
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +1
Query: 7 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 183
MGID I +K +RT KS D+ +N+ FN ++L+RLFMS++N+
Sbjct: 1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60
Query: 184 PISVSRLARHMKKPTREGLIAVVVG 258
P+S+SRL M ++ IAV+VG
Sbjct: 61 PLSLSRLVEFM--TGKDDKIAVLVG 83
>At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A)
Length = 135
Score = 118 bits (284), Expect = 3e-27
Identities = 58/91 (63%), Positives = 67/91 (73%), Gaps = 1/91 (1%)
Frame = +3
Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPT-GKKTVLVQGQ 431
GTVT+DVR+ +P +TV AL TE ARARI AGGE LTFDQLAL PT + TVL++G
Sbjct: 30 GTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGP 89
Query: 432 RNAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524
+N R AV+HFGPAPG P SHTKPYVR K
Sbjct: 90 KNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120
Score = 35.1 bits (77), Expect = 0.036
Identities = 16/32 (50%), Positives = 25/32 (78%)
Frame = +1
Query: 163 MSRINRPPISVSRLARHMKKPTREGLIAVVVG 258
MS++N+ P+S+SRL R+M ++G IAV+VG
Sbjct: 1 MSKVNKAPLSLSRLVRYM--DGKDGKIAVIVG 30
>At2g02640.1 68415.m00203 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 627
Score = 31.1 bits (67), Expect = 0.58
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 308 CSSCYRKSSCTHFGCWRRNSYF 373
CS+C RKS+ + C+ RN YF
Sbjct: 423 CSACMRKSNGFGYSCYNRNCYF 444
>At1g73730.1 68414.m08537 ethylene-insensitive3-like3 (EIL3)
identical to ethylene-insensitive3-like3 (EIL3)
GB:AF004215 [Arabidopsis thaliana] (Cell 89 (7),
1133-1144 (1997))
Length = 567
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 474 GAPRSHTKPYVRPRDMKKQGPVVVL 548
G P+S + PY +P D+KK V VL
Sbjct: 215 GLPKSQSPPYRKPHDLKKMWKVGVL 239
>At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to
homeodomain transcription factor (AGL30) GI:3461830 from
[Arabidopsis thaliana]; contains Pfam domain PF00319:
SRF-type transcription factor (DNA-binding and
dimerisation domain); PMID: 12837945
Length = 389
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 465 GQSDALPNEHFADLVPVLSSCQSEHEEPADQ 373
G S LP+ +PV SSC E +P DQ
Sbjct: 223 GDSSFLPHREMDGSIPVYSSCFFESTKPEDQ 253
>At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 883
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 272 RETVQDTEDDGGCSSCY--RKSSCTHFGCWRRNSYF*SAGSSCS 397
R+ + +E GGC+SC KS T C R+ + S G+ CS
Sbjct: 145 RDHGECSESVGGCASCIVRSKSDITTSQCGDRDRRYTSPGNPCS 188
>At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam
profile: PF03399 SAC3/GANP family
Length = 1720
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 456 DALPNEHFADLVPVLSSCQSEHEEP 382
+++PN L+ V+SSC EH EP
Sbjct: 1288 ESVPNGSVLPLLVVISSCNGEHMEP 1312
>At1g05440.1 68414.m00552 expressed protein ; expression supported
by MPSS
Length = 393
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -2
Query: 449 CLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSF 327
CL S++ TL L +S+ ++L + NF S+ ++ TSF
Sbjct: 71 CLDSLNATLDLMPLSVQKSSLTKLSSASNFKSTVESTPTSF 111
>At3g59820.1 68416.m06675 calcium-binding mitochondrial
protein-related contains weak similarity to
Calcium-binding mitochondrial protein Anon-60Da
(Swiss-Prot:P91927) [Drosophila melanogaster]
Length = 755
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 136 NQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLI 243
+Q V + S INRPP+ + H R+GL+
Sbjct: 34 SQTVHSHAYHSGINRPPVETKPVTEHKSFTRRDGLL 69
>At3g28360.1 68416.m03544 ABC transporter family protein similar to
P-glycoprotein homologue GI:2292907 from [Hordeum
vulgare subsp. vulgare]
Length = 1158
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 360 EILTFDQLALRAPTGKKTVLVQGQRNAR 443
E L FD L L+ P+GK LV G + +
Sbjct: 290 ETLIFDDLCLKIPSGKTVALVGGSGSGK 317
>At4g35730.1 68417.m05071 expressed protein contains Pfam profile:
PF03398 eukaryotic protein of unknown function, DUF292
Length = 430
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 299 DGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTGTRS 430
D SS Y K + G RR+SY + G + SD++E+ T T +
Sbjct: 289 DSETSSYYAKPGAENRGMGRRHSYN-NPGINESDYEEEYTNTEA 331
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 27.5 bits (58), Expect = 7.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +2
Query: 308 CSSCYRKSSCTHFGCWR 358
CSSC+ K C CW+
Sbjct: 359 CSSCFGKPKCPKCSCWK 375
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,705,357
Number of Sequences: 28952
Number of extensions: 297198
Number of successful extensions: 789
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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