BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1092 (600 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) simi... 127 5e-30 At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ... 126 1e-29 At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A) 118 3e-27 At2g02640.1 68415.m00203 DC1 domain-containing protein contain... 31 0.58 At1g73730.1 68414.m08537 ethylene-insensitive3-like3 (EIL3) iden... 29 2.4 At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to hom... 29 3.1 At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pf... 28 4.1 At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam ... 28 4.1 At1g05440.1 68414.m00552 expressed protein ; expression supporte... 28 4.1 At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-r... 28 5.4 At3g28360.1 68416.m03544 ABC transporter family protein similar ... 28 5.4 At4g35730.1 68417.m05071 expressed protein contains Pfam profil... 27 7.2 At1g32190.1 68414.m03959 expressed protein 27 7.2 >At3g05590.1 68416.m00621 60S ribosomal protein L18 (RPL18B) similar to GB:P42791 Length = 187 Score = 127 bits (307), Expect = 5e-30 Identities = 58/90 (64%), Positives = 73/90 (81%) Frame = +3 Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 434 GT+T+D+R+++IP M V AL TE+ARARI AGGE LTFDQLALRAP G+ TVL++G + Sbjct: 83 GTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPK 142 Query: 435 NAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524 N+R AV+HFGPAPG P SH+KPYVR + K Sbjct: 143 NSREAVKHFGPAPGVPHSHSKPYVRAKGRK 172 Score = 61.7 bits (143), Expect = 4e-10 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%) Frame = +1 Query: 7 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 183 MGID I +K +RT KS D+ TN+KFN ++L+RLFMS++N+ Sbjct: 1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKA 60 Query: 184 PISVSRLARHMKKPTREGLIAVVVG 258 P+S+SRL M +E IAV+VG Sbjct: 61 PLSLSRLVEFM--TGKEDKIAVLVG 83 >At5g27850.1 68418.m03341 60S ribosomal protein L18 (RPL18C) 60S ribosomal protein L18, Arabidopsis thaliana, SWISSPROT:RL18_ARATH Length = 187 Score = 126 bits (303), Expect = 1e-29 Identities = 58/90 (64%), Positives = 73/90 (81%) Frame = +3 Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPTGKKTVLVQGQR 434 GT+T+D+R+++IP M V AL TE+ARARI AGGE LTFDQLALRAP G+ TVL++G + Sbjct: 83 GTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPK 142 Query: 435 NAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524 N+R AV+HFGPAPG P S+TKPYVR + K Sbjct: 143 NSREAVKHFGPAPGVPHSNTKPYVRHKGRK 172 Score = 57.2 bits (132), Expect = 8e-09 Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Frame = +1 Query: 7 MGID-INHKHDRKVRRTEVKSQDIXXXXXXXXXXXXXXXTNAKFNQIVLRRLFMSRINRP 183 MGID I +K +RT KS D+ +N+ FN ++L+RLFMS++N+ Sbjct: 1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKA 60 Query: 184 PISVSRLARHMKKPTREGLIAVVVG 258 P+S+SRL M ++ IAV+VG Sbjct: 61 PLSLSRLVEFM--TGKDDKIAVLVG 83 >At2g47570.1 68415.m05936 60S ribosomal protein L18 (RPL18A) Length = 135 Score = 118 bits (284), Expect = 3e-27 Identities = 58/91 (63%), Positives = 67/91 (73%), Gaps = 1/91 (1%) Frame = +3 Query: 255 GTVTNDVRLYKIPKMTVAALHVTEKARARILAAGGEILTFDQLALRAPT-GKKTVLVQGQ 431 GTVT+DVR+ +P +TV AL TE ARARI AGGE LTFDQLAL PT + TVL++G Sbjct: 30 GTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGP 89 Query: 432 RNAR*AVRHFGPAPGAPRSHTKPYVRPRDMK 524 +N R AV+HFGPAPG P SHTKPYVR K Sbjct: 90 KNTREAVKHFGPAPGVPHSHTKPYVRQTGKK 120 Score = 35.1 bits (77), Expect = 0.036 Identities = 16/32 (50%), Positives = 25/32 (78%) Frame = +1 Query: 163 MSRINRPPISVSRLARHMKKPTREGLIAVVVG 258 MS++N+ P+S+SRL R+M ++G IAV+VG Sbjct: 1 MSKVNKAPLSLSRLVRYM--DGKDGKIAVIVG 30 >At2g02640.1 68415.m00203 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 627 Score = 31.1 bits (67), Expect = 0.58 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = +2 Query: 308 CSSCYRKSSCTHFGCWRRNSYF 373 CS+C RKS+ + C+ RN YF Sbjct: 423 CSACMRKSNGFGYSCYNRNCYF 444 >At1g73730.1 68414.m08537 ethylene-insensitive3-like3 (EIL3) identical to ethylene-insensitive3-like3 (EIL3) GB:AF004215 [Arabidopsis thaliana] (Cell 89 (7), 1133-1144 (1997)) Length = 567 Score = 29.1 bits (62), Expect = 2.4 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +3 Query: 474 GAPRSHTKPYVRPRDMKKQGPVVVL 548 G P+S + PY +P D+KK V VL Sbjct: 215 GLPKSQSPPYRKPHDLKKMWKVGVL 239 >At1g18750.1 68414.m02338 MADS-box protein (AGL65) similar to homeodomain transcription factor (AGL30) GI:3461830 from [Arabidopsis thaliana]; contains Pfam domain PF00319: SRF-type transcription factor (DNA-binding and dimerisation domain); PMID: 12837945 Length = 389 Score = 28.7 bits (61), Expect = 3.1 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = -1 Query: 465 GQSDALPNEHFADLVPVLSSCQSEHEEPADQ 373 G S LP+ +PV SSC E +P DQ Sbjct: 223 GDSSFLPHREMDGSIPVYSSCFFESTKPEDQ 253 >At3g15470.1 68416.m01962 WD-40 repeat family protein contains Pfam PF00400: WD domain, G-beta repeat; similar to WD-repeat protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo sapiens] Length = 883 Score = 28.3 bits (60), Expect = 4.1 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = +2 Query: 272 RETVQDTEDDGGCSSCY--RKSSCTHFGCWRRNSYF*SAGSSCS 397 R+ + +E GGC+SC KS T C R+ + S G+ CS Sbjct: 145 RDHGECSESVGGCASCIVRSKSDITTSQCGDRDRRYTSPGNPCS 188 >At3g06290.1 68416.m00722 SAC3/GANP family protein contains Pfam profile: PF03399 SAC3/GANP family Length = 1720 Score = 28.3 bits (60), Expect = 4.1 Identities = 11/25 (44%), Positives = 16/25 (64%) Frame = -1 Query: 456 DALPNEHFADLVPVLSSCQSEHEEP 382 +++PN L+ V+SSC EH EP Sbjct: 1288 ESVPNGSVLPLLVVISSCNGEHMEP 1312 >At1g05440.1 68414.m00552 expressed protein ; expression supported by MPSS Length = 393 Score = 28.3 bits (60), Expect = 4.1 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = -2 Query: 449 CLTSISLTLYQYCLLASRSTKSQLIKSKNFSSSSQNACTSF 327 CL S++ TL L +S+ ++L + NF S+ ++ TSF Sbjct: 71 CLDSLNATLDLMPLSVQKSSLTKLSSASNFKSTVESTPTSF 111 >At3g59820.1 68416.m06675 calcium-binding mitochondrial protein-related contains weak similarity to Calcium-binding mitochondrial protein Anon-60Da (Swiss-Prot:P91927) [Drosophila melanogaster] Length = 755 Score = 27.9 bits (59), Expect = 5.4 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = +1 Query: 136 NQIVLRRLFMSRINRPPISVSRLARHMKKPTREGLI 243 +Q V + S INRPP+ + H R+GL+ Sbjct: 34 SQTVHSHAYHSGINRPPVETKPVTEHKSFTRRDGLL 69 >At3g28360.1 68416.m03544 ABC transporter family protein similar to P-glycoprotein homologue GI:2292907 from [Hordeum vulgare subsp. vulgare] Length = 1158 Score = 27.9 bits (59), Expect = 5.4 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 360 EILTFDQLALRAPTGKKTVLVQGQRNAR 443 E L FD L L+ P+GK LV G + + Sbjct: 290 ETLIFDDLCLKIPSGKTVALVGGSGSGK 317 >At4g35730.1 68417.m05071 expressed protein contains Pfam profile: PF03398 eukaryotic protein of unknown function, DUF292 Length = 430 Score = 27.5 bits (58), Expect = 7.2 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = +2 Query: 299 DGGCSSCYRKSSCTHFGCWRRNSYF*SAGSSCSDWQEDSTGTRS 430 D SS Y K + G RR+SY + G + SD++E+ T T + Sbjct: 289 DSETSSYYAKPGAENRGMGRRHSYN-NPGINESDYEEEYTNTEA 331 >At1g32190.1 68414.m03959 expressed protein Length = 422 Score = 27.5 bits (58), Expect = 7.2 Identities = 8/17 (47%), Positives = 10/17 (58%) Frame = +2 Query: 308 CSSCYRKSSCTHFGCWR 358 CSSC+ K C CW+ Sbjct: 359 CSSCFGKPKCPKCSCWK 375 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,705,357 Number of Sequences: 28952 Number of extensions: 297198 Number of successful extensions: 789 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 763 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 787 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1187288784 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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