Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1091
         (723 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00015A5C1B Cluster: UPI00015A5C1B related cluster; n...    34   3.1  
UniRef50_O16260 Cluster: Serpentine receptor, class bc (Class b-...    34   4.1  
UniRef50_A7RSU6 Cluster: Predicted protein; n=1; Nematostella ve...    34   4.1  
UniRef50_A4FX45 Cluster: Putative uncharacterized protein; n=2; ...    33   9.4  

>UniRef50_UPI00015A5C1B Cluster: UPI00015A5C1B related cluster; n=1;
           Danio rerio|Rep: UPI00015A5C1B UniRef100 entry - Danio
           rerio
          Length = 289

 Score = 34.3 bits (75), Expect = 3.1
 Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = -3

Query: 712 FIDNYILFVTIIYHCVVIVRILTIF-AYIIMKFVPTSIMLITHLI*CNTHYHMLPPHSLY 536
           F+ +Y+     ++ C++I   L++F A+ +  FV + + L  H + C +  H      + 
Sbjct: 153 FVHSYVCLFVGMFVCLLICLFLSLFFAFFVCLFVHSFVHLFVHSLVC-SFMHSFVCSFIC 211

Query: 535 HFTENLVIVFVCDLCH 488
            F  +L+ +F+C   H
Sbjct: 212 LFIGSLLCLFICYFVH 227


>UniRef50_O16260 Cluster: Serpentine receptor, class bc (Class
           b-like) protein 58; n=2; Caenorhabditis elegans|Rep:
           Serpentine receptor, class bc (Class b-like) protein 58
           - Caenorhabditis elegans
          Length = 291

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 156 CYFLLWKTLVQSISFFCVNCNTLFIFRFNFIWKKLLLQ 269
           CY   WKT  Q++ +FC+   T  +F   FIW   +L+
Sbjct: 167 CYHEYWKTFSQTM-YFCIGTLTFILFFRLFIWNHFILR 203


>UniRef50_A7RSU6 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 271

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 18/70 (25%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
 Frame = -3

Query: 703 NYILFVTIIYH----CVVIVRILTIFAYIIMKFVPTSIMLITHLI*CNTHYHMLPPHS-L 539
           +++   TI+YH    C+++   +++ A I+   VP+ I++  H+  C   YH +P  + +
Sbjct: 128 HHVSSCTIMYHHVPSCIIMYHHVSLCA-IMYHHVPSCIIMCHHVSSCAIMYHHVPSCAIM 186

Query: 538 YHFTENLVIV 509
           YH+  + +I+
Sbjct: 187 YHYVPSCIIM 196


>UniRef50_A4FX45 Cluster: Putative uncharacterized protein; n=2;
           Methanococcus maripaludis|Rep: Putative uncharacterized
           protein - Methanococcus maripaludis
          Length = 163

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 11/45 (24%), Positives = 28/45 (62%)
 Frame = -3

Query: 715 FFIDNYILFVTIIYHCVVIVRILTIFAYIIMKFVPTSIMLITHLI 581
           FFI + ++++++ +    +  I+   +Y+ +KF+   ++L TH+I
Sbjct: 21  FFIYSILIYISLCHFETYLTSIIAYQSYLFLKFLLKDVILFTHII 65


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 577,735,936
Number of Sequences: 1657284
Number of extensions: 10421385
Number of successful extensions: 24357
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 23384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24341
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)