Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1091
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           27   3.6  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    26   4.7  
SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyce...    26   6.3  
SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein Pvg5|Schizos...    26   6.3  
SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        25   8.3  

>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 487 HDINHKRTQSLSFR*NGKGCEVVAYDNAYYIISD 588
           HD+ H+ T+ L    + +  +V    NAYYII+D
Sbjct: 894 HDVRHQATEKLE---SIRKQDVAIAHNAYYIITD 924


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 374 IATYLGY*NRC*IVITPSRQWSFVSVNTN 460
           +AT++   + C +V+TP ++W+  +  TN
Sbjct: 253 LATFITLLHHCLLVLTPFQKWALSAPRTN 281


>SPAC15A10.04c |zpr1||zinc finger protein Zpr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 577 CNTHYHMLPPHSLYHFTENLVIVFVCDLC 491
           C+TH  +L    + HF E +++  VCD C
Sbjct: 266 CDTHMKLL---DIPHFKEVIIMSTVCDRC 291


>SPAC22F8.02c |pvg5|mug50|PvGal biosynthesis protein
           Pvg5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 228 IFRFNFIWKKLLLQEAAYSRVLSSLKKNY 314
           IF  N   KKL  +   Y R LS+LK+N+
Sbjct: 34  IFYSNTTMKKLKTEYPIYHRHLSALKRNF 62


>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 122

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 190 VFLFFVS-IVTPYLYLDLTLFGKNSYCKRPHI 282
           + LF  S +++  +   ++LF KN+YC+ P +
Sbjct: 46  ITLFIFSFVISRMIIFFISLFNKNTYCELPAV 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,563,286
Number of Sequences: 5004
Number of extensions: 49679
Number of successful extensions: 121
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)