Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1091
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0142 + 20167876-20169108                                         29   3.7  
03_06_0387 + 33558592-33558840,33559171-33559262,33559349-335594...    28   8.6  

>02_04_0142 + 20167876-20169108
          Length = 410

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -2

Query: 659 RQNLNNFRLHYNEICAYFN 603
           R++LN+  LHY E+C+Y N
Sbjct: 205 RKHLNSKHLHYEEMCSYHN 223


>03_06_0387 +
           33558592-33558840,33559171-33559262,33559349-33559406,
           33559515-33559580,33559666-33559788
          Length = 195

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 481 KKIITILVSIYTNETPLARWRYNYLA 404
           K + T+L  +Y    P  RW YN++A
Sbjct: 92  KAVKTVLTQLYEMNPPSYRWLYNFVA 117


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,383,681
Number of Sequences: 37544
Number of extensions: 248772
Number of successful extensions: 500
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)