BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1091 (723 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_37583| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18 SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2 SB_8472| Best HMM Match : TatC (HMM E-Value=1.4) 29 2.9 SB_43963| Best HMM Match : Ammonium_transp (HMM E-Value=0) 29 3.8 SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20) 29 3.8 SB_41058| Best HMM Match : FAT (HMM E-Value=0.0082) 29 3.8 SB_53497| Best HMM Match : zf-C2H2 (HMM E-Value=0) 29 5.0 >SB_37583| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 96 Score = 33.5 bits (73), Expect = 0.18 Identities = 16/61 (26%), Positives = 31/61 (50%) Frame = -3 Query: 685 TIIYHCVVIVRILTIFAYIIMKFVPTSIMLITHLI*CNTHYHMLPPHSLYHFTENLVIVF 506 T+I +VI+ ++TI +I+ + IM I C+ H+H + +H N +I+ Sbjct: 6 TVIVIVIVIIIVITITIIVILSII--IIMTINTTFNCHRHHHYYHIYDYHHQHTNAIIII 63 Query: 505 V 503 + Sbjct: 64 I 64 >SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 146 Score = 29.9 bits (64), Expect = 2.2 Identities = 17/66 (25%), Positives = 30/66 (45%) Frame = -3 Query: 676 YHCVVIVRILTIFAYIIMKFVPTSIMLITHLI*CNTHYHMLPPHSLYHFTENLVIVFVCD 497 YHC + I+ I +I + TS + L ++H+H H L H ++IV + Sbjct: 33 YHCHHYIIIIIIIVVVITTTIITSSSSSSPLPLSSSHHHHHRRHYLCHHHIIIIIVAITT 92 Query: 496 LCHDCK 479 + C+ Sbjct: 93 VVEACR 98 >SB_8472| Best HMM Match : TatC (HMM E-Value=1.4) Length = 476 Score = 29.5 bits (63), Expect = 2.9 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 3/78 (3%) Frame = -3 Query: 700 YILFVTIIYHCVVIVRILTIFAYIIMKFVPTSIMLITHLI*CNTHY-HMLPPHSLYHFTE 524 ++L + II+ +I+ +TI I +I++IT +I THY H H+ +H Sbjct: 272 FLLVINIIFIIFIIINNVTIIVII-------TIIIITIIIAIPTHYQHKQLKHNRHH--- 321 Query: 523 NLVIVF--VCDLCHDCKK 476 N+ IV+ +C + H ++ Sbjct: 322 NIPIVYQLICIILHSFRR 339 Score = 29.1 bits (62), Expect = 3.8 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -3 Query: 721 FFFFIDNYILFVTIIYHCVVIVRILTIFAYIIMKFVPT 608 FF + N I + II + V I+ I+TI I+ +PT Sbjct: 271 FFLLVINIIFIIFIIINNVTIIVIITIIIITIIIAIPT 308 >SB_43963| Best HMM Match : Ammonium_transp (HMM E-Value=0) Length = 730 Score = 29.1 bits (62), Expect = 3.8 Identities = 13/52 (25%), Positives = 28/52 (53%) Frame = -3 Query: 715 FFIDNYILFVTIIYHCVVIVRILTIFAYIIMKFVPTSIMLITHLI*CNTHYH 560 + ++ + + I+ +IV I+ II+ V T+ +I+H++ TH+H Sbjct: 497 YIVNTTTIIIHIVNTTTIIVHIVNTTTIIIIYIVNTTT-IISHIVNTTTHHH 547 >SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20) Length = 1468 Score = 29.1 bits (62), Expect = 3.8 Identities = 20/70 (28%), Positives = 36/70 (51%) Frame = -3 Query: 712 FIDNYILFVTIIYHCVVIVRILTIFAYIIMKFVPTSIMLITHLI*CNTHYHMLPPHSLYH 533 FI I+ V ++ VVI+ I+T +++ + TSIM+I +I T + S+ Sbjct: 1204 FIIIIIIIVVVVVVVVVIIIIITATLIVLIAII-TSIMIIIIIIITTTVIIVTTIISIVF 1262 Query: 532 FTENLVIVFV 503 E +I+F+ Sbjct: 1263 TNEQHIIIFM 1272 >SB_41058| Best HMM Match : FAT (HMM E-Value=0.0082) Length = 628 Score = 29.1 bits (62), Expect = 3.8 Identities = 14/38 (36%), Positives = 21/38 (55%) Frame = -3 Query: 721 FFFFIDNYILFVTIIYHCVVIVRILTIFAYIIMKFVPT 608 FF + N I + II + V I+ I+TI I+ +PT Sbjct: 23 FFLLVINIIFIIFIIINNVTIIVIITIIIITIIIAIPT 60 Score = 29.1 bits (62), Expect = 3.8 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 3/79 (3%) Frame = -3 Query: 700 YILFVTIIYHCVVIVRILTIFAYIIMKFVPTSIMLITHLI*CNTHY-HMLPPHSLYHFTE 524 ++L + II+ +I+ +TI I +I++IT +I THY H H+ +H Sbjct: 24 FLLVINIIFIIFIIINNVTIIVII-------TIIIITIIIAIPTHYQHKQLKHNRHH--- 73 Query: 523 NLVIVF--VCDLCHDCKKI 473 N+ IV+ +C + H + + Sbjct: 74 NIPIVYQLICIILHSFRVV 92 >SB_53497| Best HMM Match : zf-C2H2 (HMM E-Value=0) Length = 462 Score = 28.7 bits (61), Expect = 5.0 Identities = 13/48 (27%), Positives = 22/48 (45%) Frame = -3 Query: 577 CNTHYHMLPPHSLYHFTENLVIVFVCDLCHDCKKIITILVSIYTNETP 434 C THY L H H E CD+C+ ++ + ++T ++P Sbjct: 236 CYTHYGSLQIHQRIHSGEKPYKCNECDMCYAKSGALSRHLMVHTGKSP 283 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,887,251 Number of Sequences: 59808 Number of extensions: 333231 Number of successful extensions: 741 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 685 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 739 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1925890720 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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