Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1091
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37583| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.18 
SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_8472| Best HMM Match : TatC (HMM E-Value=1.4)                       29   2.9  
SB_43963| Best HMM Match : Ammonium_transp (HMM E-Value=0)             29   3.8  
SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)                   29   3.8  
SB_41058| Best HMM Match : FAT (HMM E-Value=0.0082)                    29   3.8  
SB_53497| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   5.0  

>SB_37583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = -3

Query: 685 TIIYHCVVIVRILTIFAYIIMKFVPTSIMLITHLI*CNTHYHMLPPHSLYHFTENLVIVF 506
           T+I   +VI+ ++TI   +I+  +   IM I     C+ H+H    +  +H   N +I+ 
Sbjct: 6   TVIVIVIVIIIVITITIIVILSII--IIMTINTTFNCHRHHHYYHIYDYHHQHTNAIIII 63

Query: 505 V 503
           +
Sbjct: 64  I 64


>SB_18911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/66 (25%), Positives = 30/66 (45%)
 Frame = -3

Query: 676 YHCVVIVRILTIFAYIIMKFVPTSIMLITHLI*CNTHYHMLPPHSLYHFTENLVIVFVCD 497
           YHC   + I+ I   +I   + TS    + L   ++H+H    H L H    ++IV +  
Sbjct: 33  YHCHHYIIIIIIIVVVITTTIITSSSSSSPLPLSSSHHHHHRRHYLCHHHIIIIIVAITT 92

Query: 496 LCHDCK 479
           +   C+
Sbjct: 93  VVEACR 98


>SB_8472| Best HMM Match : TatC (HMM E-Value=1.4)
          Length = 476

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
 Frame = -3

Query: 700 YILFVTIIYHCVVIVRILTIFAYIIMKFVPTSIMLITHLI*CNTHY-HMLPPHSLYHFTE 524
           ++L + II+   +I+  +TI   I       +I++IT +I   THY H    H+ +H   
Sbjct: 272 FLLVINIIFIIFIIINNVTIIVII-------TIIIITIIIAIPTHYQHKQLKHNRHH--- 321

Query: 523 NLVIVF--VCDLCHDCKK 476
           N+ IV+  +C + H  ++
Sbjct: 322 NIPIVYQLICIILHSFRR 339



 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 721 FFFFIDNYILFVTIIYHCVVIVRILTIFAYIIMKFVPT 608
           FF  + N I  + II + V I+ I+TI    I+  +PT
Sbjct: 271 FFLLVINIIFIIFIIINNVTIIVIITIIIITIIIAIPT 308


>SB_43963| Best HMM Match : Ammonium_transp (HMM E-Value=0)
          Length = 730

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = -3

Query: 715 FFIDNYILFVTIIYHCVVIVRILTIFAYIIMKFVPTSIMLITHLI*CNTHYH 560
           + ++   + + I+    +IV I+     II+  V T+  +I+H++   TH+H
Sbjct: 497 YIVNTTTIIIHIVNTTTIIVHIVNTTTIIIIYIVNTTT-IISHIVNTTTHHH 547


>SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)
          Length = 1468

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/70 (28%), Positives = 36/70 (51%)
 Frame = -3

Query: 712  FIDNYILFVTIIYHCVVIVRILTIFAYIIMKFVPTSIMLITHLI*CNTHYHMLPPHSLYH 533
            FI   I+ V ++   VVI+ I+T    +++  + TSIM+I  +I   T   +    S+  
Sbjct: 1204 FIIIIIIIVVVVVVVVVIIIIITATLIVLIAII-TSIMIIIIIIITTTVIIVTTIISIVF 1262

Query: 532  FTENLVIVFV 503
              E  +I+F+
Sbjct: 1263 TNEQHIIIFM 1272


>SB_41058| Best HMM Match : FAT (HMM E-Value=0.0082)
          Length = 628

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 721 FFFFIDNYILFVTIIYHCVVIVRILTIFAYIIMKFVPT 608
           FF  + N I  + II + V I+ I+TI    I+  +PT
Sbjct: 23  FFLLVINIIFIIFIIINNVTIIVIITIIIITIIIAIPT 60



 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
 Frame = -3

Query: 700 YILFVTIIYHCVVIVRILTIFAYIIMKFVPTSIMLITHLI*CNTHY-HMLPPHSLYHFTE 524
           ++L + II+   +I+  +TI   I       +I++IT +I   THY H    H+ +H   
Sbjct: 24  FLLVINIIFIIFIIINNVTIIVII-------TIIIITIIIAIPTHYQHKQLKHNRHH--- 73

Query: 523 NLVIVF--VCDLCHDCKKI 473
           N+ IV+  +C + H  + +
Sbjct: 74  NIPIVYQLICIILHSFRVV 92


>SB_53497| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 462

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 577 CNTHYHMLPPHSLYHFTENLVIVFVCDLCHDCKKIITILVSIYTNETP 434
           C THY  L  H   H  E       CD+C+     ++  + ++T ++P
Sbjct: 236 CYTHYGSLQIHQRIHSGEKPYKCNECDMCYAKSGALSRHLMVHTGKSP 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,887,251
Number of Sequences: 59808
Number of extensions: 333231
Number of successful extensions: 741
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)